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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624911_at:

>probe:Drosophila_2:1624911_at:676:583; Interrogation_Position=1017; Antisense; TGGCAGTGCGGATCTGACCTTTGAT
>probe:Drosophila_2:1624911_at:61:693; Interrogation_Position=1036; Antisense; TTTGATCAAATGTCCGAGCTTCCGC
>probe:Drosophila_2:1624911_at:207:347; Interrogation_Position=1059; Antisense; GCATCTGGACGCCTGCATATATGAA
>probe:Drosophila_2:1624911_at:670:327; Interrogation_Position=1089; Antisense; GCGTTTGTTTTCACCGCAAGTTGCA
>probe:Drosophila_2:1624911_at:452:491; Interrogation_Position=1118; Antisense; GTAAGCTGGTCACCGAACCCTTTGA
>probe:Drosophila_2:1624911_at:548:355; Interrogation_Position=1163; Antisense; GCACTGTGCACTTGAAACCCGGAGA
>probe:Drosophila_2:1624911_at:725:25; Interrogation_Position=1198; Antisense; ATACCGGTAAAAGCTCTGCACCACG
>probe:Drosophila_2:1624911_at:68:547; Interrogation_Position=1239; Antisense; GGATCCTTTGACATTCAAGCCGGAA
>probe:Drosophila_2:1624911_at:363:203; Interrogation_Position=1255; Antisense; AAGCCGGAACGTTTCCTTGAGAGCA
>probe:Drosophila_2:1624911_at:418:673; Interrogation_Position=1318; Antisense; TACCTAGCTTTTGGCGATGGACCTC
>probe:Drosophila_2:1624911_at:421:623; Interrogation_Position=1358; Antisense; TGCGATTTGCGCTGACTCAACTTAA
>probe:Drosophila_2:1624911_at:191:173; Interrogation_Position=1433; Antisense; AAACCCGCTCGGACAATCAGATAGA
>probe:Drosophila_2:1624911_at:496:443; Interrogation_Position=1456; Antisense; GATGATACTTTCTTCATGGCCACCT
>probe:Drosophila_2:1624911_at:425:423; Interrogation_Position=934; Antisense; GAGACTACGGCTCTAGTTCTAGCGC

Paste this into a BLAST search page for me
TGGCAGTGCGGATCTGACCTTTGATTTTGATCAAATGTCCGAGCTTCCGCGCATCTGGACGCCTGCATATATGAAGCGTTTGTTTTCACCGCAAGTTGCAGTAAGCTGGTCACCGAACCCTTTGAGCACTGTGCACTTGAAACCCGGAGAATACCGGTAAAAGCTCTGCACCACGGGATCCTTTGACATTCAAGCCGGAAAAGCCGGAACGTTTCCTTGAGAGCATACCTAGCTTTTGGCGATGGACCTCTGCGATTTGCGCTGACTCAACTTAAAAACCCGCTCGGACAATCAGATAGAGATGATACTTTCTTCATGGCCACCTGAGACTACGGCTCTAGTTCTAGCGC

Full Affymetrix probeset data:

Annotations for 1624911_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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