FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624981_a_at:

>probe:Drosophila_2:1624981_a_at:311:37; Interrogation_Position=1244; Antisense; ATGCCTAACGGCGTCAACTTGGTCA
>probe:Drosophila_2:1624981_a_at:158:569; Interrogation_Position=1271; Antisense; GGCATCCCATTCGAGGCGGAGAACT
>probe:Drosophila_2:1624981_a_at:606:153; Interrogation_Position=1308; Antisense; ACAGTGTTGCGCAGGAGGAGCTCAA
>probe:Drosophila_2:1624981_a_at:643:75; Interrogation_Position=1323; Antisense; AGGAGCTCAAGACTCTGCTCGCGCA
>probe:Drosophila_2:1624981_a_at:359:635; Interrogation_Position=1341; Antisense; TCGCGCAGCCTTTGGGTCCTGTGAA
>probe:Drosophila_2:1624981_a_at:93:227; Interrogation_Position=1439; Antisense; AAGGCATAGACCAGCCCGCTGATGA
>probe:Drosophila_2:1624981_a_at:166:231; Interrogation_Position=1497; Antisense; AATGTGAACAATTGCGCTGCCCAAC
>probe:Drosophila_2:1624981_a_at:592:335; Interrogation_Position=1522; Antisense; GCTGCGCTCCACAGATTTTTACTAT
>probe:Drosophila_2:1624981_a_at:242:9; Interrogation_Position=1550; Antisense; ATTCGTTGCGTATTAGAGGACCCTT
>probe:Drosophila_2:1624981_a_at:71:433; Interrogation_Position=1565; Antisense; GAGGACCCTTTTGACAACAGAACAG
>probe:Drosophila_2:1624981_a_at:140:693; Interrogation_Position=1613; Antisense; TTTGAGGATACATTTCCCCAGAAAT
>probe:Drosophila_2:1624981_a_at:706:627; Interrogation_Position=1640; Antisense; TCCATCCATCAACAAGGCGGGCGGT
>probe:Drosophila_2:1624981_a_at:305:147; Interrogation_Position=1704; Antisense; ACTATAAGCTGCCTTCGTTTATCGG
>probe:Drosophila_2:1624981_a_at:252:293; Interrogation_Position=1719; Antisense; CGTTTATCGGTCTGTTCAACATCAT

Paste this into a BLAST search page for me
ATGCCTAACGGCGTCAACTTGGTCAGGCATCCCATTCGAGGCGGAGAACTACAGTGTTGCGCAGGAGGAGCTCAAAGGAGCTCAAGACTCTGCTCGCGCATCGCGCAGCCTTTGGGTCCTGTGAAAAGGCATAGACCAGCCCGCTGATGAAATGTGAACAATTGCGCTGCCCAACGCTGCGCTCCACAGATTTTTACTATATTCGTTGCGTATTAGAGGACCCTTGAGGACCCTTTTGACAACAGAACAGTTTGAGGATACATTTCCCCAGAAATTCCATCCATCAACAAGGCGGGCGGTACTATAAGCTGCCTTCGTTTATCGGCGTTTATCGGTCTGTTCAACATCAT

Full Affymetrix probeset data:

Annotations for 1624981_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720