FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625065_s_at:

>probe:Drosophila_2:1625065_s_at:377:17; Interrogation_Position=4290; Antisense; ATTTGTAATATTTCACCTTGGGCCA
>probe:Drosophila_2:1625065_s_at:169:227; Interrogation_Position=4314; Antisense; AAGGCAGCCTGTACATGCATACTAA
>probe:Drosophila_2:1625065_s_at:75:369; Interrogation_Position=4403; Antisense; GAATGCGAGTGTACAGGACCAGATT
>probe:Drosophila_2:1625065_s_at:509:401; Interrogation_Position=4453; Antisense; GACATAGATCGTAGGGCACCAGCAT
>probe:Drosophila_2:1625065_s_at:48:569; Interrogation_Position=4467; Antisense; GGCACCAGCATGTAGAATCCACGTA
>probe:Drosophila_2:1625065_s_at:7:357; Interrogation_Position=4528; Antisense; GCAAACCTTAAAGATCTGGCACCAA
>probe:Drosophila_2:1625065_s_at:681:565; Interrogation_Position=4545; Antisense; GGCACCAAAAGTCCATAACAGTAAA
>probe:Drosophila_2:1625065_s_at:506:265; Interrogation_Position=4563; Antisense; CAGTAAATTCGTATATCCCTTAAAG
>probe:Drosophila_2:1625065_s_at:512:203; Interrogation_Position=4627; Antisense; AACCAACTGCAAAACATCCACGAAC
>probe:Drosophila_2:1625065_s_at:226:583; Interrogation_Position=4653; Antisense; TGGCAAATTCTCGTGTCCGTCTGTC
>probe:Drosophila_2:1625065_s_at:145:305; Interrogation_Position=4669; Antisense; CCGTCTGTCTCGAATTTGTGTGCAT
>probe:Drosophila_2:1625065_s_at:610:223; Interrogation_Position=4710; Antisense; AAGGATGTGTGTCTGACCTGACTGT
>probe:Drosophila_2:1625065_s_at:387:131; Interrogation_Position=4725; Antisense; ACCTGACTGTGTGTGCGAGGCAAGT
>probe:Drosophila_2:1625065_s_at:60:117; Interrogation_Position=4753; Antisense; AGCATAAGCATACGAGGAACCCATT

Paste this into a BLAST search page for me
ATTTGTAATATTTCACCTTGGGCCAAAGGCAGCCTGTACATGCATACTAAGAATGCGAGTGTACAGGACCAGATTGACATAGATCGTAGGGCACCAGCATGGCACCAGCATGTAGAATCCACGTAGCAAACCTTAAAGATCTGGCACCAAGGCACCAAAAGTCCATAACAGTAAACAGTAAATTCGTATATCCCTTAAAGAACCAACTGCAAAACATCCACGAACTGGCAAATTCTCGTGTCCGTCTGTCCCGTCTGTCTCGAATTTGTGTGCATAAGGATGTGTGTCTGACCTGACTGTACCTGACTGTGTGTGCGAGGCAAGTAGCATAAGCATACGAGGAACCCATT

Full Affymetrix probeset data:

Annotations for 1625065_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720