FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625113_s_at:

>probe:Drosophila_2:1625113_s_at:703:561; Interrogation_Position=6700; Antisense; GGAACTAGATTTCCTTCTCTGGCGA
>probe:Drosophila_2:1625113_s_at:279:19; Interrogation_Position=6708; Antisense; ATTTCCTTCTCTGGCGACATTCTAA
>probe:Drosophila_2:1625113_s_at:39:403; Interrogation_Position=6723; Antisense; GACATTCTAAGCCAAAAGTCTGTTT
>probe:Drosophila_2:1625113_s_at:591:681; Interrogation_Position=6799; Antisense; TATTATTTACCCAAACGATTCGATA
>probe:Drosophila_2:1625113_s_at:553:637; Interrogation_Position=6827; Antisense; TCGATGGCAATAGAGCGTGGCTTTA
>probe:Drosophila_2:1625113_s_at:680:417; Interrogation_Position=6839; Antisense; GAGCGTGGCTTTAAAGCCTTCAACT
>probe:Drosophila_2:1625113_s_at:637:125; Interrogation_Position=6853; Antisense; AGCCTTCAACTTTTCAACTGTGTAT
>probe:Drosophila_2:1625113_s_at:253:479; Interrogation_Position=6886; Antisense; GTTTCGACTATCCAATTACCTTCGT
>probe:Drosophila_2:1625113_s_at:683:703; Interrogation_Position=6901; Antisense; TTACCTTCGTGAACCGCTTCAAAAT
>probe:Drosophila_2:1625113_s_at:413:191; Interrogation_Position=6940; Antisense; AACTTATCTAATTCTGGCAACTGCC
>probe:Drosophila_2:1625113_s_at:315:627; Interrogation_Position=6961; Antisense; TGCCTTTGCCCGACTACGAAATTAA
>probe:Drosophila_2:1625113_s_at:44:177; Interrogation_Position=6986; Antisense; AAACGCGACTAGCTAAGCAACACTA
>probe:Drosophila_2:1625113_s_at:237:233; Interrogation_Position=7040; Antisense; AATGCTATCACTAGCCTTAAGTGGT
>probe:Drosophila_2:1625113_s_at:175:655; Interrogation_Position=7163; Antisense; TAATTTATCATCGTACACTTGTGTA

Paste this into a BLAST search page for me
GGAACTAGATTTCCTTCTCTGGCGAATTTCCTTCTCTGGCGACATTCTAAGACATTCTAAGCCAAAAGTCTGTTTTATTATTTACCCAAACGATTCGATATCGATGGCAATAGAGCGTGGCTTTAGAGCGTGGCTTTAAAGCCTTCAACTAGCCTTCAACTTTTCAACTGTGTATGTTTCGACTATCCAATTACCTTCGTTTACCTTCGTGAACCGCTTCAAAATAACTTATCTAATTCTGGCAACTGCCTGCCTTTGCCCGACTACGAAATTAAAAACGCGACTAGCTAAGCAACACTAAATGCTATCACTAGCCTTAAGTGGTTAATTTATCATCGTACACTTGTGTA

Full Affymetrix probeset data:

Annotations for 1625113_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720