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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625125_at:

>probe:Drosophila_2:1625125_at:349:47; Interrogation_Position=1276; Antisense; ATCCTTGTATAATGGCGCCGCAGGT
>probe:Drosophila_2:1625125_at:286:69; Interrogation_Position=1327; Antisense; AGGCGGTGCCGCGTTTCAACGACAA
>probe:Drosophila_2:1625125_at:125:605; Interrogation_Position=1375; Antisense; TGATGAGCGTAAGCTGGTCCGCCGA
>probe:Drosophila_2:1625125_at:378:579; Interrogation_Position=1426; Antisense; TGGCCAGCTTCTCCAACGTTTGGAA
>probe:Drosophila_2:1625125_at:368:91; Interrogation_Position=1453; Antisense; AGTATCTGGAGAATCCTGCCCTTTT
>probe:Drosophila_2:1625125_at:367:321; Interrogation_Position=1470; Antisense; GCCCTTTTCCTACTACACTAGAGAG
>probe:Drosophila_2:1625125_at:443:197; Interrogation_Position=1508; Antisense; AACGCTTACTTTTACGGATGAGGCT
>probe:Drosophila_2:1625125_at:418:57; Interrogation_Position=1525; Antisense; ATGAGGCTCTTTCCCATGCATTTAT
>probe:Drosophila_2:1625125_at:180:601; Interrogation_Position=1574; Antisense; TGTACGACAATCTGCTTTGAGCTGG
>probe:Drosophila_2:1625125_at:413:285; Interrogation_Position=1659; Antisense; CTGAGCGGCTCCTCGATTAATTTAA
>probe:Drosophila_2:1625125_at:323:655; Interrogation_Position=1676; Antisense; TAATTTAAGCTCCTGGCGCACATGG
>probe:Drosophila_2:1625125_at:144:297; Interrogation_Position=1692; Antisense; CGCACATGGCTAACTTTCCGTTTAT
>probe:Drosophila_2:1625125_at:395:477; Interrogation_Position=1794; Antisense; GTTTAACTGTAACCGCATGCATTTA
>probe:Drosophila_2:1625125_at:90:209; Interrogation_Position=1824; Antisense; AAGCTTTGTTTCAATGGCTGTCCAA

Paste this into a BLAST search page for me
ATCCTTGTATAATGGCGCCGCAGGTAGGCGGTGCCGCGTTTCAACGACAATGATGAGCGTAAGCTGGTCCGCCGATGGCCAGCTTCTCCAACGTTTGGAAAGTATCTGGAGAATCCTGCCCTTTTGCCCTTTTCCTACTACACTAGAGAGAACGCTTACTTTTACGGATGAGGCTATGAGGCTCTTTCCCATGCATTTATTGTACGACAATCTGCTTTGAGCTGGCTGAGCGGCTCCTCGATTAATTTAATAATTTAAGCTCCTGGCGCACATGGCGCACATGGCTAACTTTCCGTTTATGTTTAACTGTAACCGCATGCATTTAAAGCTTTGTTTCAATGGCTGTCCAA

Full Affymetrix probeset data:

Annotations for 1625125_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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