FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625131_s_at:

>probe:Drosophila_2:1625131_s_at:488:17; Interrogation_Position=2145; Antisense; ATTTTTGTCTAATCATTTTCGCATA
>probe:Drosophila_2:1625131_s_at:210:245; Interrogation_Position=2200; Antisense; AATTGCCTACCTTGTGTTACTTTCG
>probe:Drosophila_2:1625131_s_at:420:673; Interrogation_Position=2207; Antisense; TACCTTGTGTTACTTTCGTCTGCTC
>probe:Drosophila_2:1625131_s_at:249:619; Interrogation_Position=2227; Antisense; TGCTCCCCTGGTTTTCTTTCGTTAG
>probe:Drosophila_2:1625131_s_at:406:697; Interrogation_Position=2239; Antisense; TTTCTTTCGTTAGGCGTTTCACCAG
>probe:Drosophila_2:1625131_s_at:523:291; Interrogation_Position=2253; Antisense; CGTTTCACCAGTTCGCACAAGTATT
>probe:Drosophila_2:1625131_s_at:571:351; Interrogation_Position=2267; Antisense; GCACAAGTATTAAACAATCCCCGCC
>probe:Drosophila_2:1625131_s_at:507:503; Interrogation_Position=2315; Antisense; GTCCCTGCACCGAAACCTTGTGAAC
>probe:Drosophila_2:1625131_s_at:43:387; Interrogation_Position=2336; Antisense; GAACAATTTGTACAGCAACTCAACT
>probe:Drosophila_2:1625131_s_at:604:669; Interrogation_Position=2458; Antisense; TACTGTTTGTTTTTCGTCTCTAAAT
>probe:Drosophila_2:1625131_s_at:498:21; Interrogation_Position=2518; Antisense; ATATTGTTTGTTGTCTCTGGTCACA
>probe:Drosophila_2:1625131_s_at:71:563; Interrogation_Position=2554; Antisense; GGAAGTCCTCTATAATATGGCCCAA
>probe:Drosophila_2:1625131_s_at:191:69; Interrogation_Position=2570; Antisense; ATGGCCCAATCATTTCAGCAACGAC
>probe:Drosophila_2:1625131_s_at:497:711; Interrogation_Position=2583; Antisense; TTCAGCAACGACAACTTAACTTAAC

Paste this into a BLAST search page for me
ATTTTTGTCTAATCATTTTCGCATAAATTGCCTACCTTGTGTTACTTTCGTACCTTGTGTTACTTTCGTCTGCTCTGCTCCCCTGGTTTTCTTTCGTTAGTTTCTTTCGTTAGGCGTTTCACCAGCGTTTCACCAGTTCGCACAAGTATTGCACAAGTATTAAACAATCCCCGCCGTCCCTGCACCGAAACCTTGTGAACGAACAATTTGTACAGCAACTCAACTTACTGTTTGTTTTTCGTCTCTAAATATATTGTTTGTTGTCTCTGGTCACAGGAAGTCCTCTATAATATGGCCCAAATGGCCCAATCATTTCAGCAACGACTTCAGCAACGACAACTTAACTTAAC

Full Affymetrix probeset data:

Annotations for 1625131_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720