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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625145_a_at:

>probe:Drosophila_2:1625145_a_at:169:659; Interrogation_Position=1086; Antisense; TAAGAATCTCCGCATATACATATAT
>probe:Drosophila_2:1625145_a_at:560:479; Interrogation_Position=1113; Antisense; GTATTATTCAAACCAAATCCGACGT
>probe:Drosophila_2:1625145_a_at:105:483; Interrogation_Position=1158; Antisense; GTATTATCTCTTCTATGTATTCGTT
>probe:Drosophila_2:1625145_a_at:199:387; Interrogation_Position=1207; Antisense; GAACACGCCAACGAAGCCAGACAAT
>probe:Drosophila_2:1625145_a_at:548:313; Interrogation_Position=1222; Antisense; GCCAGACAATTATGATCCACAACGT
>probe:Drosophila_2:1625145_a_at:348:545; Interrogation_Position=1280; Antisense; GGATCAGACATTTGATACCTCTTTC
>probe:Drosophila_2:1625145_a_at:131:153; Interrogation_Position=1315; Antisense; ACATGGGAACCGACAGTTGACAAGT
>probe:Drosophila_2:1625145_a_at:235:413; Interrogation_Position=1363; Antisense; GACCTTTGTATTTAAATGCGTTCGT
>probe:Drosophila_2:1625145_a_at:505:1; Interrogation_Position=1401; Antisense; ATGGAAGTTCCTCTCAAAAATCGCT
>probe:Drosophila_2:1625145_a_at:109:167; Interrogation_Position=1418; Antisense; AAATCGCTTGTTAATTTGCTCGAAA
>probe:Drosophila_2:1625145_a_at:222:115; Interrogation_Position=1510; Antisense; AGCTATGCTTTCTAACTACCGACTT
>probe:Drosophila_2:1625145_a_at:528:659; Interrogation_Position=1522; Antisense; TAACTACCGACTTCGTCTCGACAGT
>probe:Drosophila_2:1625145_a_at:521:281; Interrogation_Position=1538; Antisense; CTCGACAGTGCCTCAATGTGACTAT
>probe:Drosophila_2:1625145_a_at:660:367; Interrogation_Position=1635; Antisense; GAATCGATTCGTATGCACTTATACA

Paste this into a BLAST search page for me
TAAGAATCTCCGCATATACATATATGTATTATTCAAACCAAATCCGACGTGTATTATCTCTTCTATGTATTCGTTGAACACGCCAACGAAGCCAGACAATGCCAGACAATTATGATCCACAACGTGGATCAGACATTTGATACCTCTTTCACATGGGAACCGACAGTTGACAAGTGACCTTTGTATTTAAATGCGTTCGTATGGAAGTTCCTCTCAAAAATCGCTAAATCGCTTGTTAATTTGCTCGAAAAGCTATGCTTTCTAACTACCGACTTTAACTACCGACTTCGTCTCGACAGTCTCGACAGTGCCTCAATGTGACTATGAATCGATTCGTATGCACTTATACA

Full Affymetrix probeset data:

Annotations for 1625145_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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