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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625155_a_at:

>probe:Drosophila_2:1625155_a_at:524:27; Interrogation_Position=2483; Antisense; ATACCTTTGTGCTGTCGGCAGTGAC
>probe:Drosophila_2:1625155_a_at:606:617; Interrogation_Position=2513; Antisense; TGCAGGATGCCGTCAACACTATAGT
>probe:Drosophila_2:1625155_a_at:425:215; Interrogation_Position=2539; Antisense; AAGATCCTGGGCTTGGGCGCTGCAA
>probe:Drosophila_2:1625155_a_at:590:323; Interrogation_Position=2555; Antisense; GCGCTGCAAACCTCTCTGAGAATGT
>probe:Drosophila_2:1625155_a_at:652:617; Interrogation_Position=2597; Antisense; TGCATACGTTGCTCTGTTCAGGAAC
>probe:Drosophila_2:1625155_a_at:263:207; Interrogation_Position=2656; Antisense; AAGCTGGCGCTTTCAGAAGGCGTCA
>probe:Drosophila_2:1625155_a_at:728:539; Interrogation_Position=2777; Antisense; GGTTCCTGCGTGCTGTGAACGTAAT
>probe:Drosophila_2:1625155_a_at:539:29; Interrogation_Position=2800; Antisense; ATCTGAACTCCCTACGAAACTACGA
>probe:Drosophila_2:1625155_a_at:242:725; Interrogation_Position=2856; Antisense; TTGTACCTTTAAGCGACTGTCTCTG
>probe:Drosophila_2:1625155_a_at:99:241; Interrogation_Position=2882; Antisense; AATAATCTTAGAGCCCTGTCCACAA
>probe:Drosophila_2:1625155_a_at:638:91; Interrogation_Position=2926; Antisense; AGTATTGCTACTGGCCATTTCCGAA
>probe:Drosophila_2:1625155_a_at:656:125; Interrogation_Position=2969; Antisense; AGCCTTCGGTGTGCATCGCATATGT
>probe:Drosophila_2:1625155_a_at:533:703; Interrogation_Position=2994; Antisense; TTATTATCCCCATTTAGCCTGTGCA
>probe:Drosophila_2:1625155_a_at:333:687; Interrogation_Position=3058; Antisense; TATATGCAATGCAACCCGACCTGAA

Paste this into a BLAST search page for me
ATACCTTTGTGCTGTCGGCAGTGACTGCAGGATGCCGTCAACACTATAGTAAGATCCTGGGCTTGGGCGCTGCAAGCGCTGCAAACCTCTCTGAGAATGTTGCATACGTTGCTCTGTTCAGGAACAAGCTGGCGCTTTCAGAAGGCGTCAGGTTCCTGCGTGCTGTGAACGTAATATCTGAACTCCCTACGAAACTACGATTGTACCTTTAAGCGACTGTCTCTGAATAATCTTAGAGCCCTGTCCACAAAGTATTGCTACTGGCCATTTCCGAAAGCCTTCGGTGTGCATCGCATATGTTTATTATCCCCATTTAGCCTGTGCATATATGCAATGCAACCCGACCTGAA

Full Affymetrix probeset data:

Annotations for 1625155_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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