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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625172_s_at:

>probe:Drosophila_2:1625172_s_at:363:181; Interrogation_Position=2159; Antisense; AAAAACAACGTATGGCGATAGCCCG
>probe:Drosophila_2:1625172_s_at:147:575; Interrogation_Position=2172; Antisense; GGCGATAGCCCGTTTGTTTTATCAT
>probe:Drosophila_2:1625172_s_at:587:479; Interrogation_Position=2183; Antisense; GTTTGTTTTATCATAGACCGCGCTA
>probe:Drosophila_2:1625172_s_at:21:325; Interrogation_Position=2202; Antisense; GCGCTATGCCCTTCTTGATGAATGC
>probe:Drosophila_2:1625172_s_at:107:355; Interrogation_Position=2225; Antisense; GCACCAGTGCAGTATCTATAGATGT
>probe:Drosophila_2:1625172_s_at:31:709; Interrogation_Position=2296; Antisense; TTAACCATAACACACAGGCCTACTT
>probe:Drosophila_2:1625172_s_at:153:153; Interrogation_Position=2309; Antisense; ACAGGCCTACTTTGTGGAAATATCA
>probe:Drosophila_2:1625172_s_at:403:257; Interrogation_Position=2336; Antisense; CACATATTTTGGAGTTTGACGGTCT
>probe:Drosophila_2:1625172_s_at:312:611; Interrogation_Position=2352; Antisense; TGACGGTCTTGGAAACTGGCAGTTT
>probe:Drosophila_2:1625172_s_at:54:227; Interrogation_Position=2405; Antisense; AAGGACAATTTCTATCGTAGTACAA
>probe:Drosophila_2:1625172_s_at:510:201; Interrogation_Position=2443; Antisense; AACCGAAGCTTTTATACCCGTGCAG
>probe:Drosophila_2:1625172_s_at:667:685; Interrogation_Position=2455; Antisense; TATACCCGTGCAGTTTTGACATAAA
>probe:Drosophila_2:1625172_s_at:43:365; Interrogation_Position=2514; Antisense; GAATACAGTCTTCCGATTTATAAGC
>probe:Drosophila_2:1625172_s_at:69:113; Interrogation_Position=2536; Antisense; AGCAAATTCCACAAATCGTCAGGTT

Paste this into a BLAST search page for me
AAAAACAACGTATGGCGATAGCCCGGGCGATAGCCCGTTTGTTTTATCATGTTTGTTTTATCATAGACCGCGCTAGCGCTATGCCCTTCTTGATGAATGCGCACCAGTGCAGTATCTATAGATGTTTAACCATAACACACAGGCCTACTTACAGGCCTACTTTGTGGAAATATCACACATATTTTGGAGTTTGACGGTCTTGACGGTCTTGGAAACTGGCAGTTTAAGGACAATTTCTATCGTAGTACAAAACCGAAGCTTTTATACCCGTGCAGTATACCCGTGCAGTTTTGACATAAAGAATACAGTCTTCCGATTTATAAGCAGCAAATTCCACAAATCGTCAGGTT

Full Affymetrix probeset data:

Annotations for 1625172_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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