FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625173_s_at:

>probe:Drosophila_2:1625173_s_at:238:529; Interrogation_Position=1199; Antisense; GGGATCCGCATTTAGCCAACCGTTG
>probe:Drosophila_2:1625173_s_at:657:673; Interrogation_Position=1211; Antisense; TAGCCAACCGTTGCTGAATCCTTAC
>probe:Drosophila_2:1625173_s_at:632:367; Interrogation_Position=1226; Antisense; GAATCCTTACGAGCTGTCCGTGGTT
>probe:Drosophila_2:1625173_s_at:689:325; Interrogation_Position=1255; Antisense; GCGATGTCGAGTGGACGCCGCACAA
>probe:Drosophila_2:1625173_s_at:401:357; Interrogation_Position=1291; Antisense; GCAACAACGCCTATCCCATGGACTT
>probe:Drosophila_2:1625173_s_at:493:307; Interrogation_Position=1306; Antisense; CCATGGACTTCTACGCTAGCGGCAG
>probe:Drosophila_2:1625173_s_at:50:205; Interrogation_Position=1386; Antisense; AAGCCCTCGGCTGACTGTTGTGGAA
>probe:Drosophila_2:1625173_s_at:20:225; Interrogation_Position=1449; Antisense; AAGGCAGCGGCTCTGGACGATCTTC
>probe:Drosophila_2:1625173_s_at:292:585; Interrogation_Position=1462; Antisense; TGGACGATCTTCTCGACTTTAAGAA
>probe:Drosophila_2:1625173_s_at:724:543; Interrogation_Position=1488; Antisense; GGATAAGCGATTTGACCGGCTCGCT
>probe:Drosophila_2:1625173_s_at:149:555; Interrogation_Position=1526; Antisense; GGAGCCCTCCATCTCAATCGATCAG
>probe:Drosophila_2:1625173_s_at:84:451; Interrogation_Position=1555; Antisense; GATCGCCTGCCCAAATATATTGATT
>probe:Drosophila_2:1625173_s_at:432:657; Interrogation_Position=1626; Antisense; TAAGGGCATCTTTTGTGTTCATCAC
>probe:Drosophila_2:1625173_s_at:630:635; Interrogation_Position=1674; Antisense; TCGCAAACACTTTTCTAACAGAGAT

Paste this into a BLAST search page for me
GGGATCCGCATTTAGCCAACCGTTGTAGCCAACCGTTGCTGAATCCTTACGAATCCTTACGAGCTGTCCGTGGTTGCGATGTCGAGTGGACGCCGCACAAGCAACAACGCCTATCCCATGGACTTCCATGGACTTCTACGCTAGCGGCAGAAGCCCTCGGCTGACTGTTGTGGAAAAGGCAGCGGCTCTGGACGATCTTCTGGACGATCTTCTCGACTTTAAGAAGGATAAGCGATTTGACCGGCTCGCTGGAGCCCTCCATCTCAATCGATCAGGATCGCCTGCCCAAATATATTGATTTAAGGGCATCTTTTGTGTTCATCACTCGCAAACACTTTTCTAACAGAGAT

Full Affymetrix probeset data:

Annotations for 1625173_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720