Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625187_a_at:

>probe:Drosophila_2:1625187_a_at:503:695; Interrogation_Position=6043; Antisense; TTTCCTTTCTGTTTGGTTCGGCGAT
>probe:Drosophila_2:1625187_a_at:327:535; Interrogation_Position=6057; Antisense; GGTTCGGCGATCTGAAGTTTTGTTA
>probe:Drosophila_2:1625187_a_at:696:35; Interrogation_Position=6090; Antisense; ATCAGTATGTTTCCAGTTTTACGTA
>probe:Drosophila_2:1625187_a_at:688:21; Interrogation_Position=6118; Antisense; ATATTTTGAATCTGTGGCGCTGCCA
>probe:Drosophila_2:1625187_a_at:305:575; Interrogation_Position=6133; Antisense; GGCGCTGCCATCATATCATAGCTAA
>probe:Drosophila_2:1625187_a_at:110:191; Interrogation_Position=6157; Antisense; AACTATCACTTTAGAATTCCCTTAG
>probe:Drosophila_2:1625187_a_at:435:459; Interrogation_Position=6184; Antisense; GATTTGAGAAATCGCTCGCACCCAT
>probe:Drosophila_2:1625187_a_at:598:43; Interrogation_Position=6194; Antisense; ATCGCTCGCACCCATTAACATAAAT
>probe:Drosophila_2:1625187_a_at:113:705; Interrogation_Position=6230; Antisense; TTATGCCAAGCAACAAGCGAAACTT
>probe:Drosophila_2:1625187_a_at:397:169; Interrogation_Position=6358; Antisense; AAATGGAAAAGCCACGCCCGCAAAT
>probe:Drosophila_2:1625187_a_at:311:127; Interrogation_Position=6367; Antisense; AGCCACGCCCGCAAATTTTTTGATA
>probe:Drosophila_2:1625187_a_at:176:111; Interrogation_Position=6458; Antisense; AGAATATTCCACCTTTGTTGCGCAA
>probe:Drosophila_2:1625187_a_at:644:345; Interrogation_Position=6490; Antisense; GCATTTCTTGATTGCTTCCTTTAAA
>probe:Drosophila_2:1625187_a_at:635:297; Interrogation_Position=6533; Antisense; CGCTTTCCTTTATTTATACACTACA

Paste this into a BLAST search page for me
TTTCCTTTCTGTTTGGTTCGGCGATGGTTCGGCGATCTGAAGTTTTGTTAATCAGTATGTTTCCAGTTTTACGTAATATTTTGAATCTGTGGCGCTGCCAGGCGCTGCCATCATATCATAGCTAAAACTATCACTTTAGAATTCCCTTAGGATTTGAGAAATCGCTCGCACCCATATCGCTCGCACCCATTAACATAAATTTATGCCAAGCAACAAGCGAAACTTAAATGGAAAAGCCACGCCCGCAAATAGCCACGCCCGCAAATTTTTTGATAAGAATATTCCACCTTTGTTGCGCAAGCATTTCTTGATTGCTTCCTTTAAACGCTTTCCTTTATTTATACACTACA

Full Affymetrix probeset data:

Annotations for 1625187_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime