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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625195_s_at:

>probe:Drosophila_2:1625195_s_at:642:651; Interrogation_Position=7167; Antisense; TAATTCCTTAGGGTCACCCTAGTAG
>probe:Drosophila_2:1625195_s_at:270:679; Interrogation_Position=7175; Antisense; TAGGGTCACCCTAGTAGATCTTTAG
>probe:Drosophila_2:1625195_s_at:128:531; Interrogation_Position=7177; Antisense; GGGTCACCCTAGTAGATCTTTAGAT
>probe:Drosophila_2:1625195_s_at:405:485; Interrogation_Position=7188; Antisense; GTAGATCTTTAGATACACCCTAATA
>probe:Drosophila_2:1625195_s_at:540:453; Interrogation_Position=7199; Antisense; GATACACCCTAATACTAAATATGCG
>probe:Drosophila_2:1625195_s_at:294:637; Interrogation_Position=7255; Antisense; TCGACTCCCATTGGTTATCGAGTAT
>probe:Drosophila_2:1625195_s_at:651:631; Interrogation_Position=7260; Antisense; TCCCATTGGTTATCGAGTATGAACT
>probe:Drosophila_2:1625195_s_at:276:691; Interrogation_Position=7296; Antisense; TATTGCAGAATTTGCTAGTGTCAGC
>probe:Drosophila_2:1625195_s_at:308:243; Interrogation_Position=7304; Antisense; AATTTGCTAGTGTCAGCACTTGGCT
>probe:Drosophila_2:1625195_s_at:708:619; Interrogation_Position=7308; Antisense; TGCTAGTGTCAGCACTTGGCTGTCA
>probe:Drosophila_2:1625195_s_at:203:515; Interrogation_Position=7313; Antisense; GTGTCAGCACTTGGCTGTCACAAGA
>probe:Drosophila_2:1625195_s_at:40:113; Interrogation_Position=7318; Antisense; AGCACTTGGCTGTCACAAGAGATCT
>probe:Drosophila_2:1625195_s_at:181:415; Interrogation_Position=7430; Antisense; GACCAACTGCGTTTTGAGACTTTAT
>probe:Drosophila_2:1625195_s_at:307:311; Interrogation_Position=7432; Antisense; CCAACTGCGTTTTGAGACTTTATTA

Paste this into a BLAST search page for me
TAATTCCTTAGGGTCACCCTAGTAGTAGGGTCACCCTAGTAGATCTTTAGGGGTCACCCTAGTAGATCTTTAGATGTAGATCTTTAGATACACCCTAATAGATACACCCTAATACTAAATATGCGTCGACTCCCATTGGTTATCGAGTATTCCCATTGGTTATCGAGTATGAACTTATTGCAGAATTTGCTAGTGTCAGCAATTTGCTAGTGTCAGCACTTGGCTTGCTAGTGTCAGCACTTGGCTGTCAGTGTCAGCACTTGGCTGTCACAAGAAGCACTTGGCTGTCACAAGAGATCTGACCAACTGCGTTTTGAGACTTTATCCAACTGCGTTTTGAGACTTTATTA

Full Affymetrix probeset data:

Annotations for 1625195_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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