FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625199_s_at:

>probe:Drosophila_2:1625199_s_at:30:703; Interrogation_Position=1949; Antisense; TTTTGCGACCTACTAACATTGTAAC
>probe:Drosophila_2:1625199_s_at:222:273; Interrogation_Position=1965; Antisense; CATTGTAACCAATTCGACCAGTGGA
>probe:Drosophila_2:1625199_s_at:649:99; Interrogation_Position=2005; Antisense; AGAGGAATGCCTTTGAATTAACTTC
>probe:Drosophila_2:1625199_s_at:661:241; Interrogation_Position=2020; Antisense; AATTAACTTCGTCAATTTCTGCACG
>probe:Drosophila_2:1625199_s_at:14:19; Interrogation_Position=2034; Antisense; ATTTCTGCACGTTTGGATGCCTTAT
>probe:Drosophila_2:1625199_s_at:404:313; Interrogation_Position=2052; Antisense; GCCTTATTTATATGAATGCCGCCGA
>probe:Drosophila_2:1625199_s_at:414:369; Interrogation_Position=2065; Antisense; GAATGCCGCCGAATGGACACAAATT
>probe:Drosophila_2:1625199_s_at:223:163; Interrogation_Position=2085; Antisense; AAATTGTCGCGCTCTCATTTCTTAA
>probe:Drosophila_2:1625199_s_at:232:339; Interrogation_Position=2095; Antisense; GCTCTCATTTCTTAACCAGTGCTAA
>probe:Drosophila_2:1625199_s_at:305:705; Interrogation_Position=2129; Antisense; TTATGATTTGCTATGATCTCTGGGC
>probe:Drosophila_2:1625199_s_at:247:569; Interrogation_Position=2225; Antisense; GGCAGAGCCTATTCTTCATAACACT
>probe:Drosophila_2:1625199_s_at:62:161; Interrogation_Position=2379; Antisense; ACAACGCGATTGTCCTGTTTCAAAA
>probe:Drosophila_2:1625199_s_at:537:183; Interrogation_Position=2400; Antisense; AAAATTACCAACACATCCGCATTAC
>probe:Drosophila_2:1625199_s_at:549:43; Interrogation_Position=2414; Antisense; ATCCGCATTACTTTGGTTGTAGACG

Paste this into a BLAST search page for me
TTTTGCGACCTACTAACATTGTAACCATTGTAACCAATTCGACCAGTGGAAGAGGAATGCCTTTGAATTAACTTCAATTAACTTCGTCAATTTCTGCACGATTTCTGCACGTTTGGATGCCTTATGCCTTATTTATATGAATGCCGCCGAGAATGCCGCCGAATGGACACAAATTAAATTGTCGCGCTCTCATTTCTTAAGCTCTCATTTCTTAACCAGTGCTAATTATGATTTGCTATGATCTCTGGGCGGCAGAGCCTATTCTTCATAACACTACAACGCGATTGTCCTGTTTCAAAAAAAATTACCAACACATCCGCATTACATCCGCATTACTTTGGTTGTAGACG

Full Affymetrix probeset data:

Annotations for 1625199_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720