FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625230_a_at:

>probe:Drosophila_2:1625230_a_at:730:367; Interrogation_Position=4969; Antisense; GAATGGGCGGTAGCTCTTCGAACTC
>probe:Drosophila_2:1625230_a_at:413:23; Interrogation_Position=5016; Antisense; ATATCCTCCAGTTTGGCCCAGGCGG
>probe:Drosophila_2:1625230_a_at:126:1; Interrogation_Position=5043; Antisense; GGATTAAGGCGGATCGTTTGTAAAG
>probe:Drosophila_2:1625230_a_at:715:205; Interrogation_Position=5065; Antisense; AAGTTACTTCACTGTACTCCAACCG
>probe:Drosophila_2:1625230_a_at:389:145; Interrogation_Position=5080; Antisense; ACTCCAACCGGAGGCGTCTTAGCGA
>probe:Drosophila_2:1625230_a_at:367:477; Interrogation_Position=5095; Antisense; GTCTTAGCGACCAACAAAAGGCCGT
>probe:Drosophila_2:1625230_a_at:149:169; Interrogation_Position=5111; Antisense; AAAGGCCGTGTGCATTGTGGTCTCC
>probe:Drosophila_2:1625230_a_at:8:597; Interrogation_Position=5126; Antisense; TGTGGTCTCCTTCCTAGTGGGCACT
>probe:Drosophila_2:1625230_a_at:475:679; Interrogation_Position=5140; Antisense; TAGTGGGCACTTTCCTGGTCGCCAT
>probe:Drosophila_2:1625230_a_at:599:589; Interrogation_Position=5155; Antisense; TGGTCGCCATGCTCGTAAATATGTT
>probe:Drosophila_2:1625230_a_at:331:293; Interrogation_Position=5197; Antisense; CGAGATTCAAACAAATGGCGCCCAA
>probe:Drosophila_2:1625230_a_at:24:581; Interrogation_Position=5212; Antisense; TGGCGCCCAACGTGGAGTACCACAG
>probe:Drosophila_2:1625230_a_at:20:429; Interrogation_Position=5226; Antisense; GAGTACCACAGGATTTGAAGGCAAA
>probe:Drosophila_2:1625230_a_at:602:675; Interrogation_Position=5350; Antisense; TATATTTACCCTAACTGAATGAAAC

Paste this into a BLAST search page for me
GAATGGGCGGTAGCTCTTCGAACTCATATCCTCCAGTTTGGCCCAGGCGGGGATTAAGGCGGATCGTTTGTAAAGAAGTTACTTCACTGTACTCCAACCGACTCCAACCGGAGGCGTCTTAGCGAGTCTTAGCGACCAACAAAAGGCCGTAAAGGCCGTGTGCATTGTGGTCTCCTGTGGTCTCCTTCCTAGTGGGCACTTAGTGGGCACTTTCCTGGTCGCCATTGGTCGCCATGCTCGTAAATATGTTCGAGATTCAAACAAATGGCGCCCAATGGCGCCCAACGTGGAGTACCACAGGAGTACCACAGGATTTGAAGGCAAATATATTTACCCTAACTGAATGAAAC

Full Affymetrix probeset data:

Annotations for 1625230_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720