FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625264_s_at:

>probe:Drosophila_2:1625264_s_at:25:87; Interrogation_Position=1035; Antisense; AGTCGTTCCAGTTCTACTCGGAGGG
>probe:Drosophila_2:1625264_s_at:101:435; Interrogation_Position=1055; Antisense; GAGGGCGTCTACAACGAGCCGCAGT
>probe:Drosophila_2:1625264_s_at:66:417; Interrogation_Position=1070; Antisense; GAGCCGCAGTGTGATGCCCAGAATC
>probe:Drosophila_2:1625264_s_at:254:299; Interrogation_Position=1086; Antisense; CCCAGAATCTGGATCACGGTGTGCT
>probe:Drosophila_2:1625264_s_at:162:137; Interrogation_Position=1131; Antisense; ACGAGTCCGGCGAGGATTACTGGCT
>probe:Drosophila_2:1625264_s_at:438:221; Interrogation_Position=1190; Antisense; AAGGGCTTCATCAAGATGCTGCGCA
>probe:Drosophila_2:1625264_s_at:139:77; Interrogation_Position=1218; Antisense; AGGAGAACCAGTGCGGCATCGCTAG
>probe:Drosophila_2:1625264_s_at:441:117; Interrogation_Position=1250; Antisense; AGCTATCCCCTGGTCTAGAGCAGAA
>probe:Drosophila_2:1625264_s_at:206:195; Interrogation_Position=1273; Antisense; AACTGATGTAGTTTAGCCCCAGCAT
>probe:Drosophila_2:1625264_s_at:74:479; Interrogation_Position=1283; Antisense; GTTTAGCCCCAGCATTCATATGATA
>probe:Drosophila_2:1625264_s_at:622:223; Interrogation_Position=1405; Antisense; AATGGGTCCATTGTATTCGCGTTTC
>probe:Drosophila_2:1625264_s_at:533:327; Interrogation_Position=1423; Antisense; GCGTTTCTCTGCCATCATGTATGAT
>probe:Drosophila_2:1625264_s_at:275:501; Interrogation_Position=923; Antisense; GTCGGAGCCACCGATCGTGGATTCA
>probe:Drosophila_2:1625264_s_at:500:589; Interrogation_Position=940; Antisense; TGGATTCACCGATATTCCCCAGGGT

Paste this into a BLAST search page for me
AGTCGTTCCAGTTCTACTCGGAGGGGAGGGCGTCTACAACGAGCCGCAGTGAGCCGCAGTGTGATGCCCAGAATCCCCAGAATCTGGATCACGGTGTGCTACGAGTCCGGCGAGGATTACTGGCTAAGGGCTTCATCAAGATGCTGCGCAAGGAGAACCAGTGCGGCATCGCTAGAGCTATCCCCTGGTCTAGAGCAGAAAACTGATGTAGTTTAGCCCCAGCATGTTTAGCCCCAGCATTCATATGATAAATGGGTCCATTGTATTCGCGTTTCGCGTTTCTCTGCCATCATGTATGATGTCGGAGCCACCGATCGTGGATTCATGGATTCACCGATATTCCCCAGGGT

Full Affymetrix probeset data:

Annotations for 1625264_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720