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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625299_at:

>probe:Drosophila_2:1625299_at:158:133; Interrogation_Position=114; Antisense; ACCGCAAGTCCGTTGGCTCGTAAAT
>probe:Drosophila_2:1625299_at:201:687; Interrogation_Position=126; Antisense; TTGGCTCGTAAATGGACTGCTTGTC
>probe:Drosophila_2:1625299_at:457:557; Interrogation_Position=139; Antisense; GGACTGCTTGTCGACAATCAAAACG
>probe:Drosophila_2:1625299_at:415:177; Interrogation_Position=159; Antisense; AAACGAGCACAATTCCGGCGATGTT
>probe:Drosophila_2:1625299_at:60:685; Interrogation_Position=183; Antisense; TATCGAGAACCGTCTGTTGTGGCCA
>probe:Drosophila_2:1625299_at:576:729; Interrogation_Position=199; Antisense; TTGTGGCCATCGGTGCAGCGCAACG
>probe:Drosophila_2:1625299_at:541:351; Interrogation_Position=213; Antisense; GCAGCGCAACGATTTGAATTCCGTA
>probe:Drosophila_2:1625299_at:463:717; Interrogation_Position=231; Antisense; TTCCGTATTCACATGTCAGGCACTG
>probe:Drosophila_2:1625299_at:21:533; Interrogation_Position=24; Antisense; GGGTCGTCAGCTGAATGGTACTCAA
>probe:Drosophila_2:1625299_at:644:495; Interrogation_Position=245; Antisense; GTCAGGCACTGAATACGCAATTAGA
>probe:Drosophila_2:1625299_at:575:375; Interrogation_Position=282; Antisense; GAAGAGCTTCATACTGGATATGCAC
>probe:Drosophila_2:1625299_at:19:543; Interrogation_Position=297; Antisense; GGATATGCACTGTAAGTCGCGTTGA
>probe:Drosophila_2:1625299_at:696:433; Interrogation_Position=64; Antisense; GAGGGCGATGATATCGTTATCACTT
>probe:Drosophila_2:1625299_at:499:291; Interrogation_Position=78; Antisense; CGTTATCACTTGTCGTGTGGTGGGC

Paste this into a BLAST search page for me
ACCGCAAGTCCGTTGGCTCGTAAATTTGGCTCGTAAATGGACTGCTTGTCGGACTGCTTGTCGACAATCAAAACGAAACGAGCACAATTCCGGCGATGTTTATCGAGAACCGTCTGTTGTGGCCATTGTGGCCATCGGTGCAGCGCAACGGCAGCGCAACGATTTGAATTCCGTATTCCGTATTCACATGTCAGGCACTGGGGTCGTCAGCTGAATGGTACTCAAGTCAGGCACTGAATACGCAATTAGAGAAGAGCTTCATACTGGATATGCACGGATATGCACTGTAAGTCGCGTTGAGAGGGCGATGATATCGTTATCACTTCGTTATCACTTGTCGTGTGGTGGGC

Full Affymetrix probeset data:

Annotations for 1625299_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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