FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625458_a_at:

>probe:Drosophila_2:1625458_a_at:224:505; Interrogation_Position=3395; Antisense; GTGCCCACGTCGTTTAAGTTCGGCT
>probe:Drosophila_2:1625458_a_at:130:471; Interrogation_Position=3412; Antisense; GTTCGGCTCCTAAGAAACTGAATTG
>probe:Drosophila_2:1625458_a_at:510:363; Interrogation_Position=3431; Antisense; GAATTGACCAGATCACCAGACACTT
>probe:Drosophila_2:1625458_a_at:429:397; Interrogation_Position=3449; Antisense; GACACTTGGTTCGATTTCTGACTTG
>probe:Drosophila_2:1625458_a_at:598:463; Interrogation_Position=3473; Antisense; GATTGTTTCTCATATTCTTTCCAAA
>probe:Drosophila_2:1625458_a_at:31:41; Interrogation_Position=3524; Antisense; ATCTGGCATGCTGATGATGGCTTTG
>probe:Drosophila_2:1625458_a_at:275:71; Interrogation_Position=3550; Antisense; AGGCATTCTCTTGGTTTTCGTACAC
>probe:Drosophila_2:1625458_a_at:569:515; Interrogation_Position=3578; Antisense; GTGTACCCATGTATGCTGCGACAAT
>probe:Drosophila_2:1625458_a_at:607:409; Interrogation_Position=3644; Antisense; GACGAGACCGCACTATATTTATTGT
>probe:Drosophila_2:1625458_a_at:260:309; Interrogation_Position=3698; Antisense; CCAGGGCGGCCAACTAAATTATGAT
>probe:Drosophila_2:1625458_a_at:601:155; Interrogation_Position=3781; Antisense; ACACGTCAGGACGAGAAGGTCTCAT
>probe:Drosophila_2:1625458_a_at:580:13; Interrogation_Position=3804; Antisense; ATTAAATGAGATTGTGCCCACCAGC
>probe:Drosophila_2:1625458_a_at:111:423; Interrogation_Position=3877; Antisense; GAGAATTCAACGCAGAGCATTTCAC
>probe:Drosophila_2:1625458_a_at:454:419; Interrogation_Position=3891; Antisense; GAGCATTTCACATACATTTTCTTTA

Paste this into a BLAST search page for me
GTGCCCACGTCGTTTAAGTTCGGCTGTTCGGCTCCTAAGAAACTGAATTGGAATTGACCAGATCACCAGACACTTGACACTTGGTTCGATTTCTGACTTGGATTGTTTCTCATATTCTTTCCAAAATCTGGCATGCTGATGATGGCTTTGAGGCATTCTCTTGGTTTTCGTACACGTGTACCCATGTATGCTGCGACAATGACGAGACCGCACTATATTTATTGTCCAGGGCGGCCAACTAAATTATGATACACGTCAGGACGAGAAGGTCTCATATTAAATGAGATTGTGCCCACCAGCGAGAATTCAACGCAGAGCATTTCACGAGCATTTCACATACATTTTCTTTA

Full Affymetrix probeset data:

Annotations for 1625458_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720