FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625462_s_at:

>probe:Drosophila_2:1625462_s_at:119:191; Interrogation_Position=1047; Antisense; AACTTTTCGGCAGCAAGGCACGTGA
>probe:Drosophila_2:1625462_s_at:66:111; Interrogation_Position=1098; Antisense; AGAAGGTCGCCATCGCGTTGAGTGA
>probe:Drosophila_2:1625462_s_at:560:553; Interrogation_Position=1145; Antisense; GGAGCTGCCCTTCATCTAATGAGAT
>probe:Drosophila_2:1625462_s_at:160:427; Interrogation_Position=1165; Antisense; GAGATCGGACCTGGAACACTTGCGC
>probe:Drosophila_2:1625462_s_at:135:187; Interrogation_Position=1179; Antisense; AACACTTGCGCTCGGTTTTCATGGC
>probe:Drosophila_2:1625462_s_at:293:119; Interrogation_Position=1257; Antisense; AGCTGGGCGATGTGAAGTTCTTCTT
>probe:Drosophila_2:1625462_s_at:201:729; Interrogation_Position=1280; Antisense; TTGGAGAAGCTGGTCAACACCGGCT
>probe:Drosophila_2:1625462_s_at:57:415; Interrogation_Position=772; Antisense; GACCACCATGGCCATCGATTTGAGT
>probe:Drosophila_2:1625462_s_at:558:457; Interrogation_Position=788; Antisense; GATTTGAGTCGTTTGTACGGGCACA
>probe:Drosophila_2:1625462_s_at:583:579; Interrogation_Position=813; Antisense; TGGCCAATCCCATCGTGAAGCGGAG
>probe:Drosophila_2:1625462_s_at:417:417; Interrogation_Position=835; Antisense; GAGCGAAGCCTGTCATCCGTATGAG
>probe:Drosophila_2:1625462_s_at:670:461; Interrogation_Position=853; Antisense; GTATGAGCCCTTCAAGTGTCCCGGG
>probe:Drosophila_2:1625462_s_at:521:21; Interrogation_Position=901; Antisense; ATATTTATGCGATGGTGCACCCGAT
>probe:Drosophila_2:1625462_s_at:127:25; Interrogation_Position=948; Antisense; ATATGCGTCTATGTACGGCTGCCAA

Paste this into a BLAST search page for me
AACTTTTCGGCAGCAAGGCACGTGAAGAAGGTCGCCATCGCGTTGAGTGAGGAGCTGCCCTTCATCTAATGAGATGAGATCGGACCTGGAACACTTGCGCAACACTTGCGCTCGGTTTTCATGGCAGCTGGGCGATGTGAAGTTCTTCTTTTGGAGAAGCTGGTCAACACCGGCTGACCACCATGGCCATCGATTTGAGTGATTTGAGTCGTTTGTACGGGCACATGGCCAATCCCATCGTGAAGCGGAGGAGCGAAGCCTGTCATCCGTATGAGGTATGAGCCCTTCAAGTGTCCCGGGATATTTATGCGATGGTGCACCCGATATATGCGTCTATGTACGGCTGCCAA

Full Affymetrix probeset data:

Annotations for 1625462_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720