FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625474_s_at:

>probe:Drosophila_2:1625474_s_at:276:589; Interrogation_Position=1303; Antisense; TGGATGCCTGCTCTCTTTGTGGACG
>probe:Drosophila_2:1625474_s_at:589:691; Interrogation_Position=1318; Antisense; TTTGTGGACGCTCTGCTCTGGATAC
>probe:Drosophila_2:1625474_s_at:340:691; Interrogation_Position=1358; Antisense; TATTGTGCCGCGTTCAAAACCGCAT
>probe:Drosophila_2:1625474_s_at:499:717; Interrogation_Position=1402; Antisense; TTCGAGTACTATGCCAACAACGTTT
>probe:Drosophila_2:1625474_s_at:154:553; Interrogation_Position=1427; Antisense; GGAACTTTGACAACTCGGAGGCGGT
>probe:Drosophila_2:1625474_s_at:278:197; Interrogation_Position=1481; Antisense; AACGGCGCACCTACGTGATCGAGAA
>probe:Drosophila_2:1625474_s_at:515:97; Interrogation_Position=1505; Antisense; AGATCGAGCTGGACCTTATCGACTA
>probe:Drosophila_2:1625474_s_at:408:705; Interrogation_Position=1520; Antisense; TTATCGACTACTTCACCAACTGTGT
>probe:Drosophila_2:1625474_s_at:505:429; Interrogation_Position=1573; Antisense; GAGTCAGACGAATCGATTCCGGCCG
>probe:Drosophila_2:1625474_s_at:186:161; Interrogation_Position=1640; Antisense; ACAAGGGCATCTGGATCTTCGGCAT
>probe:Drosophila_2:1625474_s_at:570:569; Interrogation_Position=1660; Antisense; GGCATCCTCTACATGCTCTATAGGT
>probe:Drosophila_2:1625474_s_at:471:275; Interrogation_Position=1677; Antisense; CTATAGGTGTTTCTTCGCGGGCTAA
>probe:Drosophila_2:1625474_s_at:180:559; Interrogation_Position=1735; Antisense; GGAAACCAAAAGATGTGCCCTGCCC
>probe:Drosophila_2:1625474_s_at:320:333; Interrogation_Position=1769; Antisense; GCTGTTATGTTTGCTCTAGGATCTA

Paste this into a BLAST search page for me
TGGATGCCTGCTCTCTTTGTGGACGTTTGTGGACGCTCTGCTCTGGATACTATTGTGCCGCGTTCAAAACCGCATTTCGAGTACTATGCCAACAACGTTTGGAACTTTGACAACTCGGAGGCGGTAACGGCGCACCTACGTGATCGAGAAAGATCGAGCTGGACCTTATCGACTATTATCGACTACTTCACCAACTGTGTGAGTCAGACGAATCGATTCCGGCCGACAAGGGCATCTGGATCTTCGGCATGGCATCCTCTACATGCTCTATAGGTCTATAGGTGTTTCTTCGCGGGCTAAGGAAACCAAAAGATGTGCCCTGCCCGCTGTTATGTTTGCTCTAGGATCTA

Full Affymetrix probeset data:

Annotations for 1625474_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720