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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625475_s_at:

>probe:Drosophila_2:1625475_s_at:648:719; Interrogation_Position=1973; Antisense; TTGAGTGTGCTGTGTGTAACCATTT
>probe:Drosophila_2:1625475_s_at:441:515; Interrogation_Position=1986; Antisense; GTGTAACCATTTTTGTCATCAGCAA
>probe:Drosophila_2:1625475_s_at:373:25; Interrogation_Position=2017; Antisense; ATAGTTGCACGTTCGAGCGTTTTTC
>probe:Drosophila_2:1625475_s_at:149:471; Interrogation_Position=2027; Antisense; GTTCGAGCGTTTTTCAACTACATAA
>probe:Drosophila_2:1625475_s_at:650:29; Interrogation_Position=2186; Antisense; ATACATTTTCCTAATATCCACCAAA
>probe:Drosophila_2:1625475_s_at:663:387; Interrogation_Position=2215; Antisense; GAAACACGACGACGATGCCTCATGG
>probe:Drosophila_2:1625475_s_at:515:409; Interrogation_Position=2225; Antisense; GACGATGCCTCATGGAAACAACACA
>probe:Drosophila_2:1625475_s_at:441:315; Interrogation_Position=2270; Antisense; GCCATAGTTTACATAAGCCGCAATT
>probe:Drosophila_2:1625475_s_at:298:363; Interrogation_Position=2289; Antisense; GCAATTTATATTGGCCAGCAGCTGG
>probe:Drosophila_2:1625475_s_at:723:113; Interrogation_Position=2305; Antisense; AGCAGCTGGACGCACGACAGTTTTG
>probe:Drosophila_2:1625475_s_at:215:399; Interrogation_Position=2320; Antisense; GACAGTTTTGTACTTTTTGAGCATA
>probe:Drosophila_2:1625475_s_at:148:117; Interrogation_Position=2339; Antisense; AGCATATTTGCAGGCGTTGGCGAGC
>probe:Drosophila_2:1625475_s_at:109:729; Interrogation_Position=2355; Antisense; TTGGCGAGCATTTCCCGGCCCAGAA
>probe:Drosophila_2:1625475_s_at:286:321; Interrogation_Position=2372; Antisense; GCCCAGAACCAGTAGTAGCCGCATA

Paste this into a BLAST search page for me
TTGAGTGTGCTGTGTGTAACCATTTGTGTAACCATTTTTGTCATCAGCAAATAGTTGCACGTTCGAGCGTTTTTCGTTCGAGCGTTTTTCAACTACATAAATACATTTTCCTAATATCCACCAAAGAAACACGACGACGATGCCTCATGGGACGATGCCTCATGGAAACAACACAGCCATAGTTTACATAAGCCGCAATTGCAATTTATATTGGCCAGCAGCTGGAGCAGCTGGACGCACGACAGTTTTGGACAGTTTTGTACTTTTTGAGCATAAGCATATTTGCAGGCGTTGGCGAGCTTGGCGAGCATTTCCCGGCCCAGAAGCCCAGAACCAGTAGTAGCCGCATA

Full Affymetrix probeset data:

Annotations for 1625475_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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