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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625486_a_at:

>probe:Drosophila_2:1625486_a_at:252:373; Interrogation_Position=1018; Antisense; GAAGGTGTCCAATTTCTGCTGGCCC
>probe:Drosophila_2:1625486_a_at:664:203; Interrogation_Position=1113; Antisense; AAGCCCGGGTGCATATGTGTATCAA
>probe:Drosophila_2:1625486_a_at:621:209; Interrogation_Position=1136; Antisense; AAGAAATCCGGAACTGGCCGCATTT
>probe:Drosophila_2:1625486_a_at:458:17; Interrogation_Position=1157; Antisense; ATTTCTACGGCTGCGGAATGGACGA
>probe:Drosophila_2:1625486_a_at:356:317; Interrogation_Position=1189; Antisense; GCCTGCGGCATCGAATTGGGCATGA
>probe:Drosophila_2:1625486_a_at:346:27; Interrogation_Position=1239; Antisense; ATAGCTACAGACTTTTCTACCACCT
>probe:Drosophila_2:1625486_a_at:611:503; Interrogation_Position=760; Antisense; GTCCTAATCACCCACATTGGAGTGC
>probe:Drosophila_2:1625486_a_at:305:641; Interrogation_Position=789; Antisense; TCTGCCCTGCGATAACATCTACAAG
>probe:Drosophila_2:1625486_a_at:206:99; Interrogation_Position=824; Antisense; AGATGCGCACCATTCAGGATTCAGC
>probe:Drosophila_2:1625486_a_at:314:223; Interrogation_Position=859; Antisense; AAGGGTCTGCCGGATATCCAATCCA
>probe:Drosophila_2:1625486_a_at:602:433; Interrogation_Position=901; Antisense; GAGGGTAACATCTACGTTGGCCGCG
>probe:Drosophila_2:1625486_a_at:434:527; Interrogation_Position=929; Antisense; GGGACTGGGCCAACACGTATGCGAA
>probe:Drosophila_2:1625486_a_at:500:483; Interrogation_Position=945; Antisense; GTATGCGAACCAGACATTGGCCATT
>probe:Drosophila_2:1625486_a_at:683:727; Interrogation_Position=961; Antisense; TTGGCCATTACCTTTATGGGCGACT

Paste this into a BLAST search page for me
GAAGGTGTCCAATTTCTGCTGGCCCAAGCCCGGGTGCATATGTGTATCAAAAGAAATCCGGAACTGGCCGCATTTATTTCTACGGCTGCGGAATGGACGAGCCTGCGGCATCGAATTGGGCATGAATAGCTACAGACTTTTCTACCACCTGTCCTAATCACCCACATTGGAGTGCTCTGCCCTGCGATAACATCTACAAGAGATGCGCACCATTCAGGATTCAGCAAGGGTCTGCCGGATATCCAATCCAGAGGGTAACATCTACGTTGGCCGCGGGGACTGGGCCAACACGTATGCGAAGTATGCGAACCAGACATTGGCCATTTTGGCCATTACCTTTATGGGCGACT

Full Affymetrix probeset data:

Annotations for 1625486_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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