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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625515_a_at:

>probe:Drosophila_2:1625515_a_at:584:207; Interrogation_Position=2411; Antisense; AAGCATTGCTCCCAACGTACAAGAG
>probe:Drosophila_2:1625515_a_at:631:357; Interrogation_Position=2450; Antisense; GCAACATACCGCCTATGAGGATCGT
>probe:Drosophila_2:1625515_a_at:412:545; Interrogation_Position=2468; Antisense; GGATCGTACAGTGACAGTCCTGCCA
>probe:Drosophila_2:1625515_a_at:303:505; Interrogation_Position=2484; Antisense; GTCCTGCCACCGTATAATCTATGTA
>probe:Drosophila_2:1625515_a_at:370:359; Interrogation_Position=2519; Antisense; GCAACCACAACCATTCGAGGCTGAG
>probe:Drosophila_2:1625515_a_at:662:605; Interrogation_Position=2630; Antisense; TGAGCAGTTCCTGAAGTTGTCCGCT
>probe:Drosophila_2:1625515_a_at:329:95; Interrogation_Position=2644; Antisense; AGTTGTCCGCTCATGAATATTCAGA
>probe:Drosophila_2:1625515_a_at:307:107; Interrogation_Position=2666; Antisense; AGAAACTGACAGACGCTCCGCGGCT
>probe:Drosophila_2:1625515_a_at:419:107; Interrogation_Position=2720; Antisense; AGAAGCGGCATTGGTCGGTGAATCC
>probe:Drosophila_2:1625515_a_at:220:453; Interrogation_Position=2751; Antisense; GATCTTGAAGATCCGCCAGAGTTTC
>probe:Drosophila_2:1625515_a_at:427:409; Interrogation_Position=2818; Antisense; GACGAGGACCCAACGCCGATGGAAT
>probe:Drosophila_2:1625515_a_at:630:291; Interrogation_Position=2856; Antisense; CGTGAGCCGTGAGCGCCATATAATA
>probe:Drosophila_2:1625515_a_at:216:31; Interrogation_Position=2875; Antisense; ATAATACCACCAGCCTTTAAGCAAG
>probe:Drosophila_2:1625515_a_at:573:35; Interrogation_Position=2949; Antisense; ATCAGAGCTTTTTGTTTTCCACCCA

Paste this into a BLAST search page for me
AAGCATTGCTCCCAACGTACAAGAGGCAACATACCGCCTATGAGGATCGTGGATCGTACAGTGACAGTCCTGCCAGTCCTGCCACCGTATAATCTATGTAGCAACCACAACCATTCGAGGCTGAGTGAGCAGTTCCTGAAGTTGTCCGCTAGTTGTCCGCTCATGAATATTCAGAAGAAACTGACAGACGCTCCGCGGCTAGAAGCGGCATTGGTCGGTGAATCCGATCTTGAAGATCCGCCAGAGTTTCGACGAGGACCCAACGCCGATGGAATCGTGAGCCGTGAGCGCCATATAATAATAATACCACCAGCCTTTAAGCAAGATCAGAGCTTTTTGTTTTCCACCCA

Full Affymetrix probeset data:

Annotations for 1625515_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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