FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625568_a_at:

>probe:Drosophila_2:1625568_a_at:388:347; Interrogation_Position=1213; Antisense; GCATCTGTGCGCCAAGCTAGCTAGC
>probe:Drosophila_2:1625568_a_at:662:549; Interrogation_Position=1259; Antisense; GGAGTGATCCTCGAAAGCCCGTTCA
>probe:Drosophila_2:1625568_a_at:68:97; Interrogation_Position=1299; Antisense; AGATACGCATGCATCCGTTTGCCAA
>probe:Drosophila_2:1625568_a_at:621:207; Interrogation_Position=1331; Antisense; AAGAATCTGCCCTGGTTCAATTTTA
>probe:Drosophila_2:1625568_a_at:598:709; Interrogation_Position=1346; Antisense; TTCAATTTTACCATCTCGCAACCAA
>probe:Drosophila_2:1625568_a_at:320:443; Interrogation_Position=1400; Antisense; GATGTTCATGTCTTGGAGTTCCGGC
>probe:Drosophila_2:1625568_a_at:93:407; Interrogation_Position=1451; Antisense; GACGATGTCGTGGTGCCGTTTAATC
>probe:Drosophila_2:1625568_a_at:636:695; Interrogation_Position=1469; Antisense; TTTAATCTGGGCTATCGTCTGTATA
>probe:Drosophila_2:1625568_a_at:269:97; Interrogation_Position=1511; Antisense; AGAAGTCGAACCTCGGGACCTGTGG
>probe:Drosophila_2:1625568_a_at:252:681; Interrogation_Position=1565; Antisense; TATGGACACAAATACCTCTGCCGAG
>probe:Drosophila_2:1625568_a_at:118:289; Interrogation_Position=1593; Antisense; CGGAATTGCCGGGACTGATCCAAAA
>probe:Drosophila_2:1625568_a_at:223:595; Interrogation_Position=1621; Antisense; TGTGGAGAACTACCGTGACGCCGTA
>probe:Drosophila_2:1625568_a_at:666:315; Interrogation_Position=1640; Antisense; GCCGTATACTAGGTGCGATCAACTG
>probe:Drosophila_2:1625568_a_at:475:697; Interrogation_Position=1736; Antisense; TTTTCCGCCCTGTACAAGCAAATTA

Paste this into a BLAST search page for me
GCATCTGTGCGCCAAGCTAGCTAGCGGAGTGATCCTCGAAAGCCCGTTCAAGATACGCATGCATCCGTTTGCCAAAAGAATCTGCCCTGGTTCAATTTTATTCAATTTTACCATCTCGCAACCAAGATGTTCATGTCTTGGAGTTCCGGCGACGATGTCGTGGTGCCGTTTAATCTTTAATCTGGGCTATCGTCTGTATAAGAAGTCGAACCTCGGGACCTGTGGTATGGACACAAATACCTCTGCCGAGCGGAATTGCCGGGACTGATCCAAAATGTGGAGAACTACCGTGACGCCGTAGCCGTATACTAGGTGCGATCAACTGTTTTCCGCCCTGTACAAGCAAATTA

Full Affymetrix probeset data:

Annotations for 1625568_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720