FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625633_a_at:

>probe:Drosophila_2:1625633_a_at:618:1; Interrogation_Position=1827; Antisense; CTGGAGGAGGTTGCCGCCAAGTACA
>probe:Drosophila_2:1625633_a_at:480:81; Interrogation_Position=1894; Antisense; AGGGTGGTGTCTACGACATCTCCAA
>probe:Drosophila_2:1625633_a_at:452:159; Interrogation_Position=1918; Antisense; ACAAGCGTCGCATGGGTCTGACCGA
>probe:Drosophila_2:1625633_a_at:1:501; Interrogation_Position=1933; Antisense; GTCTGACCGAGTTCGAGGCCGTCAA
>probe:Drosophila_2:1625633_a_at:251:489; Interrogation_Position=1964; Antisense; GTACGATGGCATCACCGAGCTGATC
>probe:Drosophila_2:1625633_a_at:586:375; Interrogation_Position=1997; Antisense; GAAGAGCCTGTAAATTGCCCGCCAA
>probe:Drosophila_2:1625633_a_at:363:79; Interrogation_Position=2048; Antisense; AGGTGCATCGCCTCCGGAGTTAACA
>probe:Drosophila_2:1625633_a_at:627:427; Interrogation_Position=2064; Antisense; GAGTTAACATCTATCCACGGGTGCC
>probe:Drosophila_2:1625633_a_at:671:523; Interrogation_Position=2098; Antisense; GGGCATACGCAACAATCAAGAACAA
>probe:Drosophila_2:1625633_a_at:487:153; Interrogation_Position=2131; Antisense; ACACTTAGAAATCTTCGGCTCGTCC
>probe:Drosophila_2:1625633_a_at:58:299; Interrogation_Position=2163; Antisense; CGCTTTTGGGCGGTTCGAACTGCAA
>probe:Drosophila_2:1625633_a_at:622:357; Interrogation_Position=2234; Antisense; GCAACCTTCGGCATTTTCGTATACT
>probe:Drosophila_2:1625633_a_at:632:431; Interrogation_Position=2249; Antisense; TTCGTATACTTTGAGGGTCGCGGGC
>probe:Drosophila_2:1625633_a_at:13:73; Interrogation_Position=2276; Antisense; AGGCAGGGATCCCATCTTGCAACAC

Paste this into a BLAST search page for me
CTGGAGGAGGTTGCCGCCAAGTACAAGGGTGGTGTCTACGACATCTCCAAACAAGCGTCGCATGGGTCTGACCGAGTCTGACCGAGTTCGAGGCCGTCAAGTACGATGGCATCACCGAGCTGATCGAAGAGCCTGTAAATTGCCCGCCAAAGGTGCATCGCCTCCGGAGTTAACAGAGTTAACATCTATCCACGGGTGCCGGGCATACGCAACAATCAAGAACAAACACTTAGAAATCTTCGGCTCGTCCCGCTTTTGGGCGGTTCGAACTGCAAGCAACCTTCGGCATTTTCGTATACTTTCGTATACTTTGAGGGTCGCGGGCAGGCAGGGATCCCATCTTGCAACAC

Full Affymetrix probeset data:

Annotations for 1625633_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720