FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625768_s_at:

>probe:Drosophila_2:1625768_s_at:647:429; Interrogation_Position=3072; Antisense; GAGTCGCCCGTAGACAAAATGTGTC
>probe:Drosophila_2:1625768_s_at:348:513; Interrogation_Position=3118; Antisense; GTGTTGAATCATCCAACGGATCTTT
>probe:Drosophila_2:1625768_s_at:434:139; Interrogation_Position=3133; Antisense; ACGGATCTTTCCTAAGACGAACGAT
>probe:Drosophila_2:1625768_s_at:674:453; Interrogation_Position=3155; Antisense; GATAACTAACTCGAAACGTCACGAA
>probe:Drosophila_2:1625768_s_at:388:213; Interrogation_Position=3193; Antisense; AAGACGCTTTCAGCATGACAGGGAT
>probe:Drosophila_2:1625768_s_at:411:395; Interrogation_Position=3209; Antisense; GACAGGGATGGGATTACTTTACCCA
>probe:Drosophila_2:1625768_s_at:175:433; Interrogation_Position=3238; Antisense; GAGTCCAGCATCTAAACTATTTGTT
>probe:Drosophila_2:1625768_s_at:315:615; Interrogation_Position=3358; Antisense; TGCAAAATACTCAACTGGCCACCTA
>probe:Drosophila_2:1625768_s_at:512:313; Interrogation_Position=3375; Antisense; GCCACCTAACTTTTCTCTTGCAAAA
>probe:Drosophila_2:1625768_s_at:391:561; Interrogation_Position=3404; Antisense; GGAAGCCATGGGAGGTTGATTTATT
>probe:Drosophila_2:1625768_s_at:407:57; Interrogation_Position=3431; Antisense; ATGTAACGCACTTATTCCAAATGAT
>probe:Drosophila_2:1625768_s_at:266:457; Interrogation_Position=3453; Antisense; GATATGCCACCAAAATGTACGACCT
>probe:Drosophila_2:1625768_s_at:151:487; Interrogation_Position=3468; Antisense; TGTACGACCTAGTTAAGTTATTACT
>probe:Drosophila_2:1625768_s_at:557:661; Interrogation_Position=3526; Antisense; TAAAGCCTAATTTATCCAAAGTCAA

Paste this into a BLAST search page for me
GAGTCGCCCGTAGACAAAATGTGTCGTGTTGAATCATCCAACGGATCTTTACGGATCTTTCCTAAGACGAACGATGATAACTAACTCGAAACGTCACGAAAAGACGCTTTCAGCATGACAGGGATGACAGGGATGGGATTACTTTACCCAGAGTCCAGCATCTAAACTATTTGTTTGCAAAATACTCAACTGGCCACCTAGCCACCTAACTTTTCTCTTGCAAAAGGAAGCCATGGGAGGTTGATTTATTATGTAACGCACTTATTCCAAATGATGATATGCCACCAAAATGTACGACCTTGTACGACCTAGTTAAGTTATTACTTAAAGCCTAATTTATCCAAAGTCAA

Full Affymetrix probeset data:

Annotations for 1625768_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720