FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625795_a_at:

>probe:Drosophila_2:1625795_a_at:387:401; Interrogation_Position=1750; Antisense; GACATACTCGGTTACTTTTACTTCA
>probe:Drosophila_2:1625795_a_at:525:611; Interrogation_Position=1809; Antisense; TGAAAACGTCGCCACCCAGGAAGTG
>probe:Drosophila_2:1625795_a_at:379:589; Interrogation_Position=1832; Antisense; TGGAGGCCATTATCACGAACTGTGT
>probe:Drosophila_2:1625795_a_at:719:133; Interrogation_Position=1846; Antisense; ACGAACTGTGTTGGCTTGGAGGACT
>probe:Drosophila_2:1625795_a_at:202:153; Interrogation_Position=1952; Antisense; ACATGGATTACCTGTCCGTGGTGCT
>probe:Drosophila_2:1625795_a_at:374:603; Interrogation_Position=2009; Antisense; TGTTCATCCGACTGCTGGACGAGAT
>probe:Drosophila_2:1625795_a_at:555:213; Interrogation_Position=2078; Antisense; AAGAGGCGTATGACATCGGCCAGCT
>probe:Drosophila_2:1625795_a_at:368:527; Interrogation_Position=2129; Antisense; GGGACGGTATCTACAGACCACTCAG
>probe:Drosophila_2:1625795_a_at:210:415; Interrogation_Position=2144; Antisense; GACCACTCAGTCAGGAGCAGCACGA
>probe:Drosophila_2:1625795_a_at:347:113; Interrogation_Position=2162; Antisense; AGCACGAGTTGCTGCGATCGGGAAA
>probe:Drosophila_2:1625795_a_at:455:607; Interrogation_Position=2197; Antisense; TGAGGATAGAGGTCCCTTTTGCGCC
>probe:Drosophila_2:1625795_a_at:226:703; Interrogation_Position=2213; Antisense; TTTTGCGCCCACAATTGTATTCCAG
>probe:Drosophila_2:1625795_a_at:466:9; Interrogation_Position=2231; Antisense; ATTCCAGCCAATCCTCTGTGTATAT
>probe:Drosophila_2:1625795_a_at:708:181; Interrogation_Position=2259; Antisense; AAAACGCTTGTCTGTCCCAATGTAT

Paste this into a BLAST search page for me
GACATACTCGGTTACTTTTACTTCATGAAAACGTCGCCACCCAGGAAGTGTGGAGGCCATTATCACGAACTGTGTACGAACTGTGTTGGCTTGGAGGACTACATGGATTACCTGTCCGTGGTGCTTGTTCATCCGACTGCTGGACGAGATAAGAGGCGTATGACATCGGCCAGCTGGGACGGTATCTACAGACCACTCAGGACCACTCAGTCAGGAGCAGCACGAAGCACGAGTTGCTGCGATCGGGAAATGAGGATAGAGGTCCCTTTTGCGCCTTTTGCGCCCACAATTGTATTCCAGATTCCAGCCAATCCTCTGTGTATATAAAACGCTTGTCTGTCCCAATGTAT

Full Affymetrix probeset data:

Annotations for 1625795_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720