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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625827_s_at:

>probe:Drosophila_2:1625827_s_at:466:597; Interrogation_Position=4215; Antisense; TGTCTCAAATTCCTCTGGCGTTACT
>probe:Drosophila_2:1625827_s_at:519:581; Interrogation_Position=4230; Antisense; TGGCGTTACTGCTAACTCTAGTACT
>probe:Drosophila_2:1625827_s_at:21:467; Interrogation_Position=4268; Antisense; GTTGTACAGCGAGTGGGAATTCCAT
>probe:Drosophila_2:1625827_s_at:181:539; Interrogation_Position=4303; Antisense; GGTACTGCAAACAGTTCTGGTTCAA
>probe:Drosophila_2:1625827_s_at:25:187; Interrogation_Position=4339; Antisense; AACAATTTAGCTAGCGGCCAGTCTA
>probe:Drosophila_2:1625827_s_at:274:311; Interrogation_Position=4355; Antisense; GCCAGTCTAGCGCTTCTAACTTAAC
>probe:Drosophila_2:1625827_s_at:236:23; Interrogation_Position=4382; Antisense; ATAGCACCAATTCAACATGGCGACA
>probe:Drosophila_2:1625827_s_at:505:171; Interrogation_Position=4430; Antisense; AAAGTCAAAGCAGGCCATCAGGCAG
>probe:Drosophila_2:1625827_s_at:56:23; Interrogation_Position=4472; Antisense; ATATATCTCTCGTTTATTCCATTGT
>probe:Drosophila_2:1625827_s_at:481:305; Interrogation_Position=4518; Antisense; CCAGTTCCATTGGTCATTGGCCATT
>probe:Drosophila_2:1625827_s_at:189:3; Interrogation_Position=4533; Antisense; ATTGGCCATTGACTATCGCATTCTG
>probe:Drosophila_2:1625827_s_at:81:405; Interrogation_Position=4543; Antisense; GACTATCGCATTCTGTGACTCAAGA
>probe:Drosophila_2:1625827_s_at:515:257; Interrogation_Position=4568; Antisense; CACACACACCCAAAAGCTTCAAATT
>probe:Drosophila_2:1625827_s_at:493:557; Interrogation_Position=4668; Antisense; GGACTTAGAATTTTGTATGCCTGTA

Paste this into a BLAST search page for me
TGTCTCAAATTCCTCTGGCGTTACTTGGCGTTACTGCTAACTCTAGTACTGTTGTACAGCGAGTGGGAATTCCATGGTACTGCAAACAGTTCTGGTTCAAAACAATTTAGCTAGCGGCCAGTCTAGCCAGTCTAGCGCTTCTAACTTAACATAGCACCAATTCAACATGGCGACAAAAGTCAAAGCAGGCCATCAGGCAGATATATCTCTCGTTTATTCCATTGTCCAGTTCCATTGGTCATTGGCCATTATTGGCCATTGACTATCGCATTCTGGACTATCGCATTCTGTGACTCAAGACACACACACCCAAAAGCTTCAAATTGGACTTAGAATTTTGTATGCCTGTA

Full Affymetrix probeset data:

Annotations for 1625827_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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