FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625895_a_at:

>probe:Drosophila_2:1625895_a_at:696:411; Interrogation_Position=2448; Antisense; GACCGTGATAGGAGTCATCGCCAGC
>probe:Drosophila_2:1625895_a_at:485:647; Interrogation_Position=2462; Antisense; TCATCGCCAGCATCGTAGTAGCCAG
>probe:Drosophila_2:1625895_a_at:121:487; Interrogation_Position=2479; Antisense; GTAGCCAGCTTAGTGGAAGTCACCA
>probe:Drosophila_2:1625895_a_at:119:373; Interrogation_Position=2494; Antisense; GAAGTCACCACCAGAAACAGCGCCG
>probe:Drosophila_2:1625895_a_at:393:399; Interrogation_Position=2518; Antisense; GACATCGCGAGTCCAGCCATTCAGG
>probe:Drosophila_2:1625895_a_at:18:51; Interrogation_Position=2548; Antisense; ATGCTGGCGGTAGCAGCAGTTACCA
>probe:Drosophila_2:1625895_a_at:605:101; Interrogation_Position=2587; Antisense; AGAGCAGCAGCCGTAGCCATGATCA
>probe:Drosophila_2:1625895_a_at:693:305; Interrogation_Position=2603; Antisense; CCATGATCATGGCAGCAACCGTAGC
>probe:Drosophila_2:1625895_a_at:191:487; Interrogation_Position=2623; Antisense; GTAGCCATGATCACGGCAGCAGCAG
>probe:Drosophila_2:1625895_a_at:597:407; Interrogation_Position=2653; Antisense; GACGGAAGCGGCACCGCACGAGATC
>probe:Drosophila_2:1625895_a_at:708:97; Interrogation_Position=2673; Antisense; AGATCCCGCTCCAAGTCGCGAAGCA
>probe:Drosophila_2:1625895_a_at:139:303; Interrogation_Position=2745; Antisense; CCGCGCAAGCGCCATTAAGAAAAAT
>probe:Drosophila_2:1625895_a_at:366:163; Interrogation_Position=2766; Antisense; AAATCTTGCGCGTAAAAATCCGAAG
>probe:Drosophila_2:1625895_a_at:13:713; Interrogation_Position=2899; Antisense; TTCATGTGTTATGCGAATATCCTCA

Paste this into a BLAST search page for me
GACCGTGATAGGAGTCATCGCCAGCTCATCGCCAGCATCGTAGTAGCCAGGTAGCCAGCTTAGTGGAAGTCACCAGAAGTCACCACCAGAAACAGCGCCGGACATCGCGAGTCCAGCCATTCAGGATGCTGGCGGTAGCAGCAGTTACCAAGAGCAGCAGCCGTAGCCATGATCACCATGATCATGGCAGCAACCGTAGCGTAGCCATGATCACGGCAGCAGCAGGACGGAAGCGGCACCGCACGAGATCAGATCCCGCTCCAAGTCGCGAAGCACCGCGCAAGCGCCATTAAGAAAAATAAATCTTGCGCGTAAAAATCCGAAGTTCATGTGTTATGCGAATATCCTCA

Full Affymetrix probeset data:

Annotations for 1625895_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720