FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625922_a_at:

>probe:Drosophila_2:1625922_a_at:536:207; Interrogation_Position=489; Antisense; AAGCAGGCTCCCATGAATCCCAAGC
>probe:Drosophila_2:1625922_a_at:603:633; Interrogation_Position=497; Antisense; TCCCATGAATCCCAAGCACCTGGAT
>probe:Drosophila_2:1625922_a_at:238:53; Interrogation_Position=501; Antisense; ATGAATCCCAAGCACCTGGATCTTA
>probe:Drosophila_2:1625922_a_at:264:367; Interrogation_Position=503; Antisense; GAATCCCAAGCACCTGGATCTTAAG
>probe:Drosophila_2:1625922_a_at:389:633; Interrogation_Position=506; Antisense; TCCCAAGCACCTGGATCTTAAGAAA
>probe:Drosophila_2:1625922_a_at:101:249; Interrogation_Position=509; Antisense; CAAGCACCTGGATCTTAAGAAAACC
>probe:Drosophila_2:1625922_a_at:28:355; Interrogation_Position=512; Antisense; GCACCTGGATCTTAAGAAAACCACA
>probe:Drosophila_2:1625922_a_at:313:105; Interrogation_Position=526; Antisense; AGAAAACCACAGGAACCGAGCAGAT
>probe:Drosophila_2:1625922_a_at:395:175; Interrogation_Position=529; Antisense; AAACCACAGGAACCGAGCAGATCGA
>probe:Drosophila_2:1625922_a_at:372:381; Interrogation_Position=538; Antisense; GAACCGAGCAGATCGATGGTGCCAA
>probe:Drosophila_2:1625922_a_at:568:131; Interrogation_Position=540; Antisense; ACCGAGCAGATCGATGGTGCCAACG
>probe:Drosophila_2:1625922_a_at:532:419; Interrogation_Position=543; Antisense; GAGCAGATCGATGGTGCCAACGAAA
>probe:Drosophila_2:1625922_a_at:208:351; Interrogation_Position=545; Antisense; GCAGATCGATGGTGCCAACGAAAAA
>probe:Drosophila_2:1625922_a_at:110:637; Interrogation_Position=550; Antisense; TCGATGGTGCCAACGAAAAAGACAG

Paste this into a BLAST search page for me
AAGCAGGCTCCCATGAATCCCAAGCTCCCATGAATCCCAAGCACCTGGATATGAATCCCAAGCACCTGGATCTTAGAATCCCAAGCACCTGGATCTTAAGTCCCAAGCACCTGGATCTTAAGAAACAAGCACCTGGATCTTAAGAAAACCGCACCTGGATCTTAAGAAAACCACAAGAAAACCACAGGAACCGAGCAGATAAACCACAGGAACCGAGCAGATCGAGAACCGAGCAGATCGATGGTGCCAAACCGAGCAGATCGATGGTGCCAACGGAGCAGATCGATGGTGCCAACGAAAGCAGATCGATGGTGCCAACGAAAAATCGATGGTGCCAACGAAAAAGACAG

Full Affymetrix probeset data:

Annotations for 1625922_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720