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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1625992_s_at:

>probe:Drosophila_2:1625992_s_at:340:573; Interrogation_Position=2336; Antisense; GGCTGATGCAGCACCGCACGTGAAT
>probe:Drosophila_2:1625992_s_at:437:637; Interrogation_Position=2402; Antisense; TCGGTCGTTCTGCAACTCGATAGTG
>probe:Drosophila_2:1625992_s_at:378:705; Interrogation_Position=2438; Antisense; TTAGACTTAAGTACGTCCCGCTGCA
>probe:Drosophila_2:1625992_s_at:54:709; Interrogation_Position=2482; Antisense; TTACTCACGCTTTCTGCCTAGGCAG
>probe:Drosophila_2:1625992_s_at:642:315; Interrogation_Position=2497; Antisense; GCCTAGGCAGGATGGCTGTTACTAA
>probe:Drosophila_2:1625992_s_at:306:475; Interrogation_Position=2514; Antisense; GTTACTAACTCTACCAGGATCACTC
>probe:Drosophila_2:1625992_s_at:94:545; Interrogation_Position=2530; Antisense; GGATCACTCGATCCCTAAACACATA
>probe:Drosophila_2:1625992_s_at:37:335; Interrogation_Position=2581; Antisense; GCTGTTTCTTTGTTGTGCCTAACCA
>probe:Drosophila_2:1625992_s_at:151:659; Interrogation_Position=2600; Antisense; TAACCAGCCGGCTAACCTGGCTAAG
>probe:Drosophila_2:1625992_s_at:417:107; Interrogation_Position=2623; Antisense; AGAACAGGTCCTAACCATAGCTTCC
>probe:Drosophila_2:1625992_s_at:194:117; Interrogation_Position=2641; Antisense; AGCTTCCCATGCAAGCGTTTATCGA
>probe:Drosophila_2:1625992_s_at:490:653; Interrogation_Position=2669; Antisense; TAATGATACCTTGCAGAGCTGACTT
>probe:Drosophila_2:1625992_s_at:186:327; Interrogation_Position=2729; Antisense; GCGATCAGTAGAGACTTTCCTCGAA
>probe:Drosophila_2:1625992_s_at:697:87; Interrogation_Position=2774; Antisense; AGTCGTGACAGAATGCAAGCCTAAC

Paste this into a BLAST search page for me
GGCTGATGCAGCACCGCACGTGAATTCGGTCGTTCTGCAACTCGATAGTGTTAGACTTAAGTACGTCCCGCTGCATTACTCACGCTTTCTGCCTAGGCAGGCCTAGGCAGGATGGCTGTTACTAAGTTACTAACTCTACCAGGATCACTCGGATCACTCGATCCCTAAACACATAGCTGTTTCTTTGTTGTGCCTAACCATAACCAGCCGGCTAACCTGGCTAAGAGAACAGGTCCTAACCATAGCTTCCAGCTTCCCATGCAAGCGTTTATCGATAATGATACCTTGCAGAGCTGACTTGCGATCAGTAGAGACTTTCCTCGAAAGTCGTGACAGAATGCAAGCCTAAC

Full Affymetrix probeset data:

Annotations for 1625992_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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