FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626018_a_at:

>probe:Drosophila_2:1626018_a_at:666:591; Interrogation_Position=5617; Antisense; TGGTGATGTGTATAGAGCGCAGTAT
>probe:Drosophila_2:1626018_a_at:477:65; Interrogation_Position=5720; Antisense; AGGCAAGTTTATGGAGACAATTCAC
>probe:Drosophila_2:1626018_a_at:584:423; Interrogation_Position=5733; Antisense; GAGACAATTCACTTGTGTTGCAATA
>probe:Drosophila_2:1626018_a_at:367:493; Interrogation_Position=5785; Antisense; GTAAGTTGCGTAGTGCAAGCCGTGA
>probe:Drosophila_2:1626018_a_at:471:355; Interrogation_Position=5799; Antisense; GCAAGCCGTGAGAATAGAGGTAACT
>probe:Drosophila_2:1626018_a_at:449:675; Interrogation_Position=5813; Antisense; TAGAGGTAACTTTCTCCACAACCCA
>probe:Drosophila_2:1626018_a_at:719:257; Interrogation_Position=5836; Antisense; CACACTCACTGATCGACAGACACAT
>probe:Drosophila_2:1626018_a_at:337:259; Interrogation_Position=5852; Antisense; CAGACACATACCCATTAACCTTAAT
>probe:Drosophila_2:1626018_a_at:431:275; Interrogation_Position=5871; Antisense; CTTAATGATTAAACGCTGGGACAGC
>probe:Drosophila_2:1626018_a_at:440:525; Interrogation_Position=5888; Antisense; GGGACAGCGGCAAAAATGTTTCCTA
>probe:Drosophila_2:1626018_a_at:589:613; Interrogation_Position=5933; Antisense; TGAAGAAAACGCTTGGAATGCCCCA
>probe:Drosophila_2:1626018_a_at:532:563; Interrogation_Position=5947; Antisense; GGAATGCCCCAATTAACGTAAACAT
>probe:Drosophila_2:1626018_a_at:155:673; Interrogation_Position=6061; Antisense; TATGCCTATACGACAGAAATTGGAC
>probe:Drosophila_2:1626018_a_at:493:609; Interrogation_Position=6186; Antisense; TGAGCAGCAAAAACGCGCAGCATAA

Paste this into a BLAST search page for me
TGGTGATGTGTATAGAGCGCAGTATAGGCAAGTTTATGGAGACAATTCACGAGACAATTCACTTGTGTTGCAATAGTAAGTTGCGTAGTGCAAGCCGTGAGCAAGCCGTGAGAATAGAGGTAACTTAGAGGTAACTTTCTCCACAACCCACACACTCACTGATCGACAGACACATCAGACACATACCCATTAACCTTAATCTTAATGATTAAACGCTGGGACAGCGGGACAGCGGCAAAAATGTTTCCTATGAAGAAAACGCTTGGAATGCCCCAGGAATGCCCCAATTAACGTAAACATTATGCCTATACGACAGAAATTGGACTGAGCAGCAAAAACGCGCAGCATAA

Full Affymetrix probeset data:

Annotations for 1626018_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720