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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626022_at:

>probe:Drosophila_2:1626022_at:21:307; Interrogation_Position=1002; Antisense; CCTGTCCAAGAGTCCTGACAAGCAG
>probe:Drosophila_2:1626022_at:152:549; Interrogation_Position=958; Antisense; GGAGCGGATCCTACTCTTGTAACCC
>probe:Drosophila_2:1626022_at:285:121; Interrogation_Position=960; Antisense; AGCGGATCCTACTCTTGTAACCCTA
>probe:Drosophila_2:1626022_at:97:545; Interrogation_Position=963; Antisense; GGATCCTACTCTTGTAACCCTAGGA
>probe:Drosophila_2:1626022_at:562:47; Interrogation_Position=965; Antisense; ATCCTACTCTTGTAACCCTAGGAGG
>probe:Drosophila_2:1626022_at:485:277; Interrogation_Position=968; Antisense; CTACTCTTGTAACCCTAGGAGGAAT
>probe:Drosophila_2:1626022_at:489:277; Interrogation_Position=971; Antisense; CTCTTGTAACCCTAGGAGGAATCTT
>probe:Drosophila_2:1626022_at:131:493; Interrogation_Position=976; Antisense; GTAACCCTAGGAGGAATCTTATTCA
>probe:Drosophila_2:1626022_at:264:549; Interrogation_Position=985; Antisense; GGAGGAATCTTATTCAGCCTGTCCA
>probe:Drosophila_2:1626022_at:463:73; Interrogation_Position=987; Antisense; AGGAATCTTATTCAGCCTGTCCAAG
>probe:Drosophila_2:1626022_at:502:365; Interrogation_Position=989; Antisense; GAATCTTATTCAGCCTGTCCAAGAG
>probe:Drosophila_2:1626022_at:95:703; Interrogation_Position=994; Antisense; TTATTCAGCCTGTCCAAGAGTCCTG
>probe:Drosophila_2:1626022_at:338:13; Interrogation_Position=996; Antisense; ATTCAGCCTGTCCAAGAGTCCTGAC
>probe:Drosophila_2:1626022_at:566:261; Interrogation_Position=999; Antisense; CAGCCTGTCCAAGAGTCCTGACAAG

Paste this into a BLAST search page for me
CCTGTCCAAGAGTCCTGACAAGCAGGGAGCGGATCCTACTCTTGTAACCCAGCGGATCCTACTCTTGTAACCCTAGGATCCTACTCTTGTAACCCTAGGAATCCTACTCTTGTAACCCTAGGAGGCTACTCTTGTAACCCTAGGAGGAATCTCTTGTAACCCTAGGAGGAATCTTGTAACCCTAGGAGGAATCTTATTCAGGAGGAATCTTATTCAGCCTGTCCAAGGAATCTTATTCAGCCTGTCCAAGGAATCTTATTCAGCCTGTCCAAGAGTTATTCAGCCTGTCCAAGAGTCCTGATTCAGCCTGTCCAAGAGTCCTGACCAGCCTGTCCAAGAGTCCTGACAAG

Full Affymetrix probeset data:

Annotations for 1626022_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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