FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626109_a_at:

>probe:Drosophila_2:1626109_a_at:171:377; Interrogation_Position=1009; Antisense; GAAGCGCTGATCACCTTTATTTTGG
>probe:Drosophila_2:1626109_a_at:244:495; Interrogation_Position=1042; Antisense; GTCAAGGCTGTTTCGGATCCTGGAC
>probe:Drosophila_2:1626109_a_at:197:457; Interrogation_Position=1072; Antisense; GATATCAAGGGATCAGCGCCACTGG
>probe:Drosophila_2:1626109_a_at:91:303; Interrogation_Position=1115; Antisense; CCGCTGGCCATTTGTGTGCAATCAA
>probe:Drosophila_2:1626109_a_at:490:177; Interrogation_Position=1138; Antisense; AAACTGAGCGGTGCCAGCATGAATC
>probe:Drosophila_2:1626109_a_at:346:679; Interrogation_Position=1187; Antisense; TAGTGCAGGGCGTCTGGACCTATCA
>probe:Drosophila_2:1626109_a_at:577:553; Interrogation_Position=1202; Antisense; GGACCTATCACTGGGTTTACTGGGT
>probe:Drosophila_2:1626109_a_at:36:605; Interrogation_Position=1247; Antisense; TGTTGGCCGGAATCATCTACAGATT
>probe:Drosophila_2:1626109_a_at:636:605; Interrogation_Position=1299; Antisense; TGAGACCGACTCGTACGACTTCTAA
>probe:Drosophila_2:1626109_a_at:390:165; Interrogation_Position=737; Antisense; AAATCGCATTCACCTTTGGCTTGAC
>probe:Drosophila_2:1626109_a_at:641:83; Interrogation_Position=796; Antisense; AGTGGCTGTCACATTAATCCGGCGG
>probe:Drosophila_2:1626109_a_at:174:305; Interrogation_Position=825; Antisense; CCTTGGATTCCTGATCGTTGGTGAG
>probe:Drosophila_2:1626109_a_at:391:643; Interrogation_Position=872; Antisense; TCTACATCATCGTCCAATGCGTGGG
>probe:Drosophila_2:1626109_a_at:48:591; Interrogation_Position=945; Antisense; TGGTGGCGACCTGGGAGTATCCTCC

Paste this into a BLAST search page for me
GAAGCGCTGATCACCTTTATTTTGGGTCAAGGCTGTTTCGGATCCTGGACGATATCAAGGGATCAGCGCCACTGGCCGCTGGCCATTTGTGTGCAATCAAAAACTGAGCGGTGCCAGCATGAATCTAGTGCAGGGCGTCTGGACCTATCAGGACCTATCACTGGGTTTACTGGGTTGTTGGCCGGAATCATCTACAGATTTGAGACCGACTCGTACGACTTCTAAAAATCGCATTCACCTTTGGCTTGACAGTGGCTGTCACATTAATCCGGCGGCCTTGGATTCCTGATCGTTGGTGAGTCTACATCATCGTCCAATGCGTGGGTGGTGGCGACCTGGGAGTATCCTCC

Full Affymetrix probeset data:

Annotations for 1626109_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720