FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626135_s_at:

>probe:Drosophila_2:1626135_s_at:312:655; Interrogation_Position=2567; Antisense; TAATCTGCTTAGACCGTCAGGGCAA
>probe:Drosophila_2:1626135_s_at:353:471; Interrogation_Position=2600; Antisense; GTTCCCTCTACCTAGACGACGAGAA
>probe:Drosophila_2:1626135_s_at:637:121; Interrogation_Position=2648; Antisense; AGCGCATCCACGTGAACTACGAGTT
>probe:Drosophila_2:1626135_s_at:169:495; Interrogation_Position=2689; Antisense; GTCAATAGCTTCGTGGGCAAGCCCA
>probe:Drosophila_2:1626135_s_at:257:211; Interrogation_Position=2719; Antisense; AAGACCCTTGCCTGGATCGAGCGAA
>probe:Drosophila_2:1626135_s_at:175:123; Interrogation_Position=2738; Antisense; AGCGAATCGTGATCGCCGGACTTGA
>probe:Drosophila_2:1626135_s_at:554:113; Interrogation_Position=2773; Antisense; AGCAGCGCCAGCATCACGGTGAATG
>probe:Drosophila_2:1626135_s_at:335:59; Interrogation_Position=2828; Antisense; ATGATAACACCGTCGTCGTGCGCAA
>probe:Drosophila_2:1626135_s_at:10:101; Interrogation_Position=2864; Antisense; AGATGGACGTCGACTTCGCCATTAA
>probe:Drosophila_2:1626135_s_at:510:485; Interrogation_Position=2901; Antisense; GTAGTCTGTAGTCGCAACGTGCGCC
>probe:Drosophila_2:1626135_s_at:501:507; Interrogation_Position=2919; Antisense; GTGCGCCGTGTATTATTGTTCTCAT
>probe:Drosophila_2:1626135_s_at:630:229; Interrogation_Position=2982; Antisense; AATGTTTTAAGCCTCCTATTCCAGG
>probe:Drosophila_2:1626135_s_at:73:221; Interrogation_Position=3018; Antisense; AATAGATTCCCTAACTACCTTCGAT
>probe:Drosophila_2:1626135_s_at:352:721; Interrogation_Position=3055; Antisense; TTCCTTCTCTGCAATTCCATCAATT

Paste this into a BLAST search page for me
TAATCTGCTTAGACCGTCAGGGCAAGTTCCCTCTACCTAGACGACGAGAAAGCGCATCCACGTGAACTACGAGTTGTCAATAGCTTCGTGGGCAAGCCCAAAGACCCTTGCCTGGATCGAGCGAAAGCGAATCGTGATCGCCGGACTTGAAGCAGCGCCAGCATCACGGTGAATGATGATAACACCGTCGTCGTGCGCAAAGATGGACGTCGACTTCGCCATTAAGTAGTCTGTAGTCGCAACGTGCGCCGTGCGCCGTGTATTATTGTTCTCATAATGTTTTAAGCCTCCTATTCCAGGAATAGATTCCCTAACTACCTTCGATTTCCTTCTCTGCAATTCCATCAATT

Full Affymetrix probeset data:

Annotations for 1626135_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720