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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626138_s_at:

>probe:Drosophila_2:1626138_s_at:423:539; Interrogation_Position=3088; Antisense; GGTAGCTTTTAGTGAGTGAATTGCC
>probe:Drosophila_2:1626138_s_at:363:85; Interrogation_Position=3102; Antisense; AGTGAATTGCCTCTGTGGATTACGC
>probe:Drosophila_2:1626138_s_at:12:287; Interrogation_Position=3114; Antisense; CTGTGGATTACGCAATATTTTCGAT
>probe:Drosophila_2:1626138_s_at:67:59; Interrogation_Position=3163; Antisense; ATGATGTTTGATATGCTCGTGTGTA
>probe:Drosophila_2:1626138_s_at:724:337; Interrogation_Position=3177; Antisense; GCTCGTGTGTATTTCGTTTTCATTA
>probe:Drosophila_2:1626138_s_at:9:477; Interrogation_Position=3214; Antisense; GTTTTTATTCGATATTTTCTACGCG
>probe:Drosophila_2:1626138_s_at:610:695; Interrogation_Position=3229; Antisense; TTTCTACGCGAATGTTCGACTGCGG
>probe:Drosophila_2:1626138_s_at:20:471; Interrogation_Position=3242; Antisense; GTTCGACTGCGGAGTGTTGATTAAA
>probe:Drosophila_2:1626138_s_at:93:607; Interrogation_Position=3378; Antisense; TGATGTGCTCAAAAGGTGTACGATT
>probe:Drosophila_2:1626138_s_at:364:533; Interrogation_Position=3392; Antisense; GGTGTACGATTATTTCCAAGCAATT
>probe:Drosophila_2:1626138_s_at:348:403; Interrogation_Position=3451; Antisense; GACTTGTTTAGTTCTGCTCACAGCT
>probe:Drosophila_2:1626138_s_at:332:339; Interrogation_Position=3466; Antisense; GCTCACAGCTCCTTTTAATTGTTGG
>probe:Drosophila_2:1626138_s_at:505:185; Interrogation_Position=3526; Antisense; AAAATATATCAGTTCGCCGCGCTGT
>probe:Drosophila_2:1626138_s_at:406:471; Interrogation_Position=3537; Antisense; GTTCGCCGCGCTGTTTAAGTGATAA

Paste this into a BLAST search page for me
GGTAGCTTTTAGTGAGTGAATTGCCAGTGAATTGCCTCTGTGGATTACGCCTGTGGATTACGCAATATTTTCGATATGATGTTTGATATGCTCGTGTGTAGCTCGTGTGTATTTCGTTTTCATTAGTTTTTATTCGATATTTTCTACGCGTTTCTACGCGAATGTTCGACTGCGGGTTCGACTGCGGAGTGTTGATTAAATGATGTGCTCAAAAGGTGTACGATTGGTGTACGATTATTTCCAAGCAATTGACTTGTTTAGTTCTGCTCACAGCTGCTCACAGCTCCTTTTAATTGTTGGAAAATATATCAGTTCGCCGCGCTGTGTTCGCCGCGCTGTTTAAGTGATAA

Full Affymetrix probeset data:

Annotations for 1626138_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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