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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626147_s_at:

>probe:Drosophila_2:1626147_s_at:599:313; Interrogation_Position=2322; Antisense; GCCAGACGCCCAAGATGGACCTGAA
>probe:Drosophila_2:1626147_s_at:273:47; Interrogation_Position=2352; Antisense; ATCCGAACTGCATCAGCGCTGGAGG
>probe:Drosophila_2:1626147_s_at:84:253; Interrogation_Position=2419; Antisense; CATTATTGCCGGAGAGAACCTGATA
>probe:Drosophila_2:1626147_s_at:533:459; Interrogation_Position=2440; Antisense; GATATTCTTCCATATCTCAGCGAAG
>probe:Drosophila_2:1626147_s_at:50:651; Interrogation_Position=2456; Antisense; TCAGCGAAGACTACGTGCCAGCAAA
>probe:Drosophila_2:1626147_s_at:500:177; Interrogation_Position=2478; Antisense; AAACGGATGTGCACCGCTTCGCTCA
>probe:Drosophila_2:1626147_s_at:548:717; Interrogation_Position=2495; Antisense; TTCGCTCAGAACATATCGCAGGCTC
>probe:Drosophila_2:1626147_s_at:636:71; Interrogation_Position=2514; Antisense; AGGCTCTGTCAGACATTCGCAGCAT
>probe:Drosophila_2:1626147_s_at:410:717; Interrogation_Position=2529; Antisense; TTCGCAGCATGTTCGAGCAGCACAT
>probe:Drosophila_2:1626147_s_at:373:567; Interrogation_Position=2591; Antisense; GGCAAATCCACATAATCCCGTTTAG
>probe:Drosophila_2:1626147_s_at:506:631; Interrogation_Position=2606; Antisense; TCCCGTTTAGTCCATGTAGTCGAGA
>probe:Drosophila_2:1626147_s_at:413:151; Interrogation_Position=2677; Antisense; ACATCTGATACATCCGTCTAGTTCG
>probe:Drosophila_2:1626147_s_at:361:161; Interrogation_Position=2759; Antisense; ACAATTGTGACTTGGCTGGTTTTAA
>probe:Drosophila_2:1626147_s_at:500:393; Interrogation_Position=2849; Antisense; GAAATCGCGTAACCTTAAGTGCTAT

Paste this into a BLAST search page for me
GCCAGACGCCCAAGATGGACCTGAAATCCGAACTGCATCAGCGCTGGAGGCATTATTGCCGGAGAGAACCTGATAGATATTCTTCCATATCTCAGCGAAGTCAGCGAAGACTACGTGCCAGCAAAAAACGGATGTGCACCGCTTCGCTCATTCGCTCAGAACATATCGCAGGCTCAGGCTCTGTCAGACATTCGCAGCATTTCGCAGCATGTTCGAGCAGCACATGGCAAATCCACATAATCCCGTTTAGTCCCGTTTAGTCCATGTAGTCGAGAACATCTGATACATCCGTCTAGTTCGACAATTGTGACTTGGCTGGTTTTAAGAAATCGCGTAACCTTAAGTGCTAT

Full Affymetrix probeset data:

Annotations for 1626147_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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