FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626178_s_at:

>probe:Drosophila_2:1626178_s_at:706:303; Interrogation_Position=4708; Antisense; CCGACCACATTTGGTGTGTTTTTGA
>probe:Drosophila_2:1626178_s_at:77:701; Interrogation_Position=4799; Antisense; TTATTTTGCCATTTCGTACGTAGTA
>probe:Drosophila_2:1626178_s_at:183:489; Interrogation_Position=4814; Antisense; GTACGTAGTATGAAGCGCATCTGTT
>probe:Drosophila_2:1626178_s_at:451:379; Interrogation_Position=4825; Antisense; GAAGCGCATCTGTTTAAGTGTAAAA
>probe:Drosophila_2:1626178_s_at:316:243; Interrogation_Position=4855; Antisense; AATTTAAAGCTCTGAATGTTGCCCA
>probe:Drosophila_2:1626178_s_at:26:369; Interrogation_Position=4868; Antisense; GAATGTTGCCCAGAATTTAGGAATG
>probe:Drosophila_2:1626178_s_at:547:43; Interrogation_Position=4953; Antisense; ATCGACATCATTTTTATTGCTGTAT
>probe:Drosophila_2:1626178_s_at:341:147; Interrogation_Position=5016; Antisense; AATCTTACGGAGTACGAGTTCGAGT
>probe:Drosophila_2:1626178_s_at:13:375; Interrogation_Position=5041; Antisense; GAAGTACATTCATTAGCCACTAAAT
>probe:Drosophila_2:1626178_s_at:576:685; Interrogation_Position=5125; Antisense; TATATTTAGTGAGCAGGATCTGTTC
>probe:Drosophila_2:1626178_s_at:477:545; Interrogation_Position=5140; Antisense; GGATCTGTTCCATATATTTTCGCGT
>probe:Drosophila_2:1626178_s_at:84:17; Interrogation_Position=5155; Antisense; ATTTTCGCGTGCAAAATGCATTTCG
>probe:Drosophila_2:1626178_s_at:251:685; Interrogation_Position=5212; Antisense; TATAGTTCTTTTGATTTACCCCATT
>probe:Drosophila_2:1626178_s_at:600:459; Interrogation_Position=5224; Antisense; GATTTACCCCATTTTAGAGACATTT

Paste this into a BLAST search page for me
CCGACCACATTTGGTGTGTTTTTGATTATTTTGCCATTTCGTACGTAGTAGTACGTAGTATGAAGCGCATCTGTTGAAGCGCATCTGTTTAAGTGTAAAAAATTTAAAGCTCTGAATGTTGCCCAGAATGTTGCCCAGAATTTAGGAATGATCGACATCATTTTTATTGCTGTATAATCTTACGGAGTACGAGTTCGAGTGAAGTACATTCATTAGCCACTAAATTATATTTAGTGAGCAGGATCTGTTCGGATCTGTTCCATATATTTTCGCGTATTTTCGCGTGCAAAATGCATTTCGTATAGTTCTTTTGATTTACCCCATTGATTTACCCCATTTTAGAGACATTT

Full Affymetrix probeset data:

Annotations for 1626178_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720