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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626179_s_at:

>probe:Drosophila_2:1626179_s_at:577:619; Interrogation_Position=1615; Antisense; TGCTGCGTTGCATCCAGAAACTGAA
>probe:Drosophila_2:1626179_s_at:26:395; Interrogation_Position=1646; Antisense; GAAAGGCGCCAACGAGGATCAAAAC
>probe:Drosophila_2:1626179_s_at:36:65; Interrogation_Position=1671; Antisense; ATGGGCATCGAGATCATCCGACGTG
>probe:Drosophila_2:1626179_s_at:22:307; Interrogation_Position=1708; Antisense; CCTGTCTCACGATTGCCAAGAATGC
>probe:Drosophila_2:1626179_s_at:241:97; Interrogation_Position=1768; Antisense; AGATCCTCGACGGTGACTATGGCTA
>probe:Drosophila_2:1626179_s_at:453:485; Interrogation_Position=1811; Antisense; GTATGGCAACATGATCGAACGCGGT
>probe:Drosophila_2:1626179_s_at:356:379; Interrogation_Position=1827; Antisense; GAACGCGGTATTATCGATCCCACCA
>probe:Drosophila_2:1626179_s_at:74:611; Interrogation_Position=1900; Antisense; TGACCACTGCCGAGGCTGTAGTTAC
>probe:Drosophila_2:1626179_s_at:39:121; Interrogation_Position=1958; Antisense; AGCGGCAGCCGGATTAGGAGCTCTC
>probe:Drosophila_2:1626179_s_at:620:573; Interrogation_Position=1998; Antisense; GGCGGAATGGGCATGTAATCCTTAA
>probe:Drosophila_2:1626179_s_at:508:39; Interrogation_Position=2015; Antisense; ATCCTTAATGAATTCCTTACCACGT
>probe:Drosophila_2:1626179_s_at:94:561; Interrogation_Position=2066; Antisense; GGAAACGCTCATGGTTTGCCACATT
>probe:Drosophila_2:1626179_s_at:80:695; Interrogation_Position=2080; Antisense; TTTGCCACATTCTAGCCGAGCGGTT
>probe:Drosophila_2:1626179_s_at:193:673; Interrogation_Position=2092; Antisense; TAGCCGAGCGGTTTGCTTTACCCTT

Paste this into a BLAST search page for me
TGCTGCGTTGCATCCAGAAACTGAAGAAAGGCGCCAACGAGGATCAAAACATGGGCATCGAGATCATCCGACGTGCCTGTCTCACGATTGCCAAGAATGCAGATCCTCGACGGTGACTATGGCTAGTATGGCAACATGATCGAACGCGGTGAACGCGGTATTATCGATCCCACCATGACCACTGCCGAGGCTGTAGTTACAGCGGCAGCCGGATTAGGAGCTCTCGGCGGAATGGGCATGTAATCCTTAAATCCTTAATGAATTCCTTACCACGTGGAAACGCTCATGGTTTGCCACATTTTTGCCACATTCTAGCCGAGCGGTTTAGCCGAGCGGTTTGCTTTACCCTT

Full Affymetrix probeset data:

Annotations for 1626179_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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