FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626228_a_at:

>probe:Drosophila_2:1626228_a_at:275:311; Interrogation_Position=2824; Antisense; GCCACCCACATCTGTTAACTTAAAG
>probe:Drosophila_2:1626228_a_at:526:215; Interrogation_Position=2922; Antisense; AAGATATTCCATTTGGCGTCCTGCA
>probe:Drosophila_2:1626228_a_at:47:729; Interrogation_Position=2934; Antisense; TTGGCGTCCTGCAAATTGAAAAAGA
>probe:Drosophila_2:1626228_a_at:567:377; Interrogation_Position=2972; Antisense; GAAGCTTTGTGTAAGAAATTGACCA
>probe:Drosophila_2:1626228_a_at:698:563; Interrogation_Position=2999; Antisense; GGAATTCAAACGGATGTGTTCATAT
>probe:Drosophila_2:1626228_a_at:547:185; Interrogation_Position=3072; Antisense; AACCAAATCGGTGATTCGAATCCGT
>probe:Drosophila_2:1626228_a_at:509:463; Interrogation_Position=3084; Antisense; GATTCGAATCCGTATTTATCATATA
>probe:Drosophila_2:1626228_a_at:29:251; Interrogation_Position=3169; Antisense; CAATGGAGTTGCTGCGTTAGGTATT
>probe:Drosophila_2:1626228_a_at:449:163; Interrogation_Position=3208; Antisense; AAATAGTTTTGCTCTTGTCGCGTTG
>probe:Drosophila_2:1626228_a_at:534:619; Interrogation_Position=3217; Antisense; TGCTCTTGTCGCGTTGGATATTCAA
>probe:Drosophila_2:1626228_a_at:407:41; Interrogation_Position=3255; Antisense; ATCGCTATTTTTTAAATTCGTTCAG
>probe:Drosophila_2:1626228_a_at:3:163; Interrogation_Position=3268; Antisense; AAATTCGTTCAGTCTTTGTTAATCA
>probe:Drosophila_2:1626228_a_at:541:169; Interrogation_Position=3304; Antisense; AAAGTGTTCAGTTGCGTTTTTTGCT
>probe:Drosophila_2:1626228_a_at:283:325; Interrogation_Position=3317; Antisense; GCGTTTTTTGCTTGCTTTTTTGTAT

Paste this into a BLAST search page for me
GCCACCCACATCTGTTAACTTAAAGAAGATATTCCATTTGGCGTCCTGCATTGGCGTCCTGCAAATTGAAAAAGAGAAGCTTTGTGTAAGAAATTGACCAGGAATTCAAACGGATGTGTTCATATAACCAAATCGGTGATTCGAATCCGTGATTCGAATCCGTATTTATCATATACAATGGAGTTGCTGCGTTAGGTATTAAATAGTTTTGCTCTTGTCGCGTTGTGCTCTTGTCGCGTTGGATATTCAAATCGCTATTTTTTAAATTCGTTCAGAAATTCGTTCAGTCTTTGTTAATCAAAAGTGTTCAGTTGCGTTTTTTGCTGCGTTTTTTGCTTGCTTTTTTGTAT

Full Affymetrix probeset data:

Annotations for 1626228_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720