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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626240_s_at:

>probe:Drosophila_2:1626240_s_at:517:33; Interrogation_Position=1834; Antisense; ATCAACTTGGCCACAGTCGAGCAAC
>probe:Drosophila_2:1626240_s_at:281:249; Interrogation_Position=1861; Antisense; CAATACTGTGCACCTCTGGAGATTC
>probe:Drosophila_2:1626240_s_at:453:11; Interrogation_Position=1882; Antisense; ATTCACCGTGTAAATTGGGCGCTGC
>probe:Drosophila_2:1626240_s_at:205:225; Interrogation_Position=1921; Antisense; AAGGAGCTGCTGCAATTCAGGACAA
>probe:Drosophila_2:1626240_s_at:373:713; Interrogation_Position=1936; Antisense; TTCAGGACAAACAGCGACCGCGACG
>probe:Drosophila_2:1626240_s_at:117:715; Interrogation_Position=1963; Antisense; TTCCTGGCGGACATGACGGGTCAGA
>probe:Drosophila_2:1626240_s_at:382:135; Interrogation_Position=1987; Antisense; ACGCTGGTCCGCGATGAGATGTACC
>probe:Drosophila_2:1626240_s_at:134:119; Interrogation_Position=2012; Antisense; AGCTCCAGGTGGTAACGATGCCCGG
>probe:Drosophila_2:1626240_s_at:41:401; Interrogation_Position=2104; Antisense; GACATCTCGCGCGTCAATAAGTATG
>probe:Drosophila_2:1626240_s_at:297:165; Interrogation_Position=2130; Antisense; AAATCAGGCCCGGTGCATATACGAC
>probe:Drosophila_2:1626240_s_at:109:219; Interrogation_Position=2173; Antisense; AAGTACTGCTACTGTCGCGATTGAT
>probe:Drosophila_2:1626240_s_at:722:95; Interrogation_Position=2273; Antisense; AGATTTTAGATTACTCCTTCCAAAG
>probe:Drosophila_2:1626240_s_at:29:111; Interrogation_Position=2296; Antisense; AGAATATTGTCACTGGCTCCTTAAG
>probe:Drosophila_2:1626240_s_at:130:453; Interrogation_Position=2327; Antisense; GATCTGCCTCAGTTTGTAATATACG

Paste this into a BLAST search page for me
ATCAACTTGGCCACAGTCGAGCAACCAATACTGTGCACCTCTGGAGATTCATTCACCGTGTAAATTGGGCGCTGCAAGGAGCTGCTGCAATTCAGGACAATTCAGGACAAACAGCGACCGCGACGTTCCTGGCGGACATGACGGGTCAGAACGCTGGTCCGCGATGAGATGTACCAGCTCCAGGTGGTAACGATGCCCGGGACATCTCGCGCGTCAATAAGTATGAAATCAGGCCCGGTGCATATACGACAAGTACTGCTACTGTCGCGATTGATAGATTTTAGATTACTCCTTCCAAAGAGAATATTGTCACTGGCTCCTTAAGGATCTGCCTCAGTTTGTAATATACG

Full Affymetrix probeset data:

Annotations for 1626240_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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