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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626246_s_at:

>probe:Drosophila_2:1626246_s_at:566:587; Interrogation_Position=1406; Antisense; TGGAGGCCCCAGACCCGGTGGATTT
>probe:Drosophila_2:1626246_s_at:89:311; Interrogation_Position=1518; Antisense; CCACGGGATGGCCAGCAGCATAATA
>probe:Drosophila_2:1626246_s_at:99:341; Interrogation_Position=1535; Antisense; GCATAATAACGAGGGCGGCGGTTCA
>probe:Drosophila_2:1626246_s_at:89:291; Interrogation_Position=1553; Antisense; CGGTTCATCCGCTCAAAATCAAAGG
>probe:Drosophila_2:1626246_s_at:582:163; Interrogation_Position=1568; Antisense; AAATCAAAGGCCACCCATCGATCGT
>probe:Drosophila_2:1626246_s_at:700:637; Interrogation_Position=1585; Antisense; TCGATCGTCGCGGTCCGGGAAACAA
>probe:Drosophila_2:1626246_s_at:33:161; Interrogation_Position=1618; Antisense; ACAATCAGAACAGCGGTCCAGGGCC
>probe:Drosophila_2:1626246_s_at:121:503; Interrogation_Position=1633; Antisense; GTCCAGGGCCGAATAAGCGTTTTGA
>probe:Drosophila_2:1626246_s_at:451:157; Interrogation_Position=1669; Antisense; ACACCGCTCCCAAGGTCAACGATGA
>probe:Drosophila_2:1626246_s_at:509:253; Interrogation_Position=1685; Antisense; CAACGATGAGCGTCAGTTTCCCACT
>probe:Drosophila_2:1626246_s_at:456:693; Interrogation_Position=1702; Antisense; TTCCCACTCTGGCTTAAATCGATCG
>probe:Drosophila_2:1626246_s_at:532:165; Interrogation_Position=1717; Antisense; AAATCGATCGTTTTGGGCAGGAGTA
>probe:Drosophila_2:1626246_s_at:10:85; Interrogation_Position=1738; Antisense; AGTAGGTTCCTCAAATTGCAGTTTT
>probe:Drosophila_2:1626246_s_at:243:249; Interrogation_Position=1882; Antisense; AATTGTAGCCGCCATTATAAGCCAA

Paste this into a BLAST search page for me
TGGAGGCCCCAGACCCGGTGGATTTCCACGGGATGGCCAGCAGCATAATAGCATAATAACGAGGGCGGCGGTTCACGGTTCATCCGCTCAAAATCAAAGGAAATCAAAGGCCACCCATCGATCGTTCGATCGTCGCGGTCCGGGAAACAAACAATCAGAACAGCGGTCCAGGGCCGTCCAGGGCCGAATAAGCGTTTTGAACACCGCTCCCAAGGTCAACGATGACAACGATGAGCGTCAGTTTCCCACTTTCCCACTCTGGCTTAAATCGATCGAAATCGATCGTTTTGGGCAGGAGTAAGTAGGTTCCTCAAATTGCAGTTTTAATTGTAGCCGCCATTATAAGCCAA

Full Affymetrix probeset data:

Annotations for 1626246_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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