FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626356_s_at:

>probe:Drosophila_2:1626356_s_at:279:517; Interrogation_Position=3852; Antisense; GTGTGTGCGGTTTAAGCCTCATTTC
>probe:Drosophila_2:1626356_s_at:615:351; Interrogation_Position=3880; Antisense; GCACTTCCGTTTCTGGCATATGAGC
>probe:Drosophila_2:1626356_s_at:405:457; Interrogation_Position=3910; Antisense; GATAGTGGCTTAACCCATGCCAACC
>probe:Drosophila_2:1626356_s_at:200:709; Interrogation_Position=3946; Antisense; TTAACCCCGCACATTCAGAATGGCA
>probe:Drosophila_2:1626356_s_at:163:177; Interrogation_Position=3976; Antisense; AAACTGCTCTTTGGGTTGTTTGGCT
>probe:Drosophila_2:1626356_s_at:447:571; Interrogation_Position=3997; Antisense; GGCTCTTTTGGCCTGCTGAAAAATG
>probe:Drosophila_2:1626356_s_at:487:19; Interrogation_Position=4032; Antisense; ATTTGCACTCGGTGCTTGTTAGCAA
>probe:Drosophila_2:1626356_s_at:89:677; Interrogation_Position=4144; Antisense; TAGTCCTGGCCTTTAACTCGGTTAG
>probe:Drosophila_2:1626356_s_at:120:591; Interrogation_Position=4173; Antisense; TGGTTAGAAGCTTGGCCATCCCGTT
>probe:Drosophila_2:1626356_s_at:347:43; Interrogation_Position=4190; Antisense; ATCCCGTTTAGCATTGCCCAGCAAT
>probe:Drosophila_2:1626356_s_at:343:477; Interrogation_Position=4233; Antisense; GTTTTCCTGCCTGTGTACAGCATAT
>probe:Drosophila_2:1626356_s_at:354:69; Interrogation_Position=4273; Antisense; AGGTTAGGTATGTCTGTCTGTCTGT
>probe:Drosophila_2:1626356_s_at:679:641; Interrogation_Position=4345; Antisense; TCTTCTAATTCCGTCTTCTTTTTTG
>probe:Drosophila_2:1626356_s_at:700:199; Interrogation_Position=4399; Antisense; AACGCACGTAAATGCATTTCTGCAG

Paste this into a BLAST search page for me
GTGTGTGCGGTTTAAGCCTCATTTCGCACTTCCGTTTCTGGCATATGAGCGATAGTGGCTTAACCCATGCCAACCTTAACCCCGCACATTCAGAATGGCAAAACTGCTCTTTGGGTTGTTTGGCTGGCTCTTTTGGCCTGCTGAAAAATGATTTGCACTCGGTGCTTGTTAGCAATAGTCCTGGCCTTTAACTCGGTTAGTGGTTAGAAGCTTGGCCATCCCGTTATCCCGTTTAGCATTGCCCAGCAATGTTTTCCTGCCTGTGTACAGCATATAGGTTAGGTATGTCTGTCTGTCTGTTCTTCTAATTCCGTCTTCTTTTTTGAACGCACGTAAATGCATTTCTGCAG

Full Affymetrix probeset data:

Annotations for 1626356_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720