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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626427_a_at:

>probe:Drosophila_2:1626427_a_at:319:91; Interrogation_Position=1641; Antisense; AGTTTATGGTGGATCGTTCGACGCT
>probe:Drosophila_2:1626427_a_at:608:703; Interrogation_Position=1644; Antisense; TTATGGTGGATCGTTCGACGCTTTC
>probe:Drosophila_2:1626427_a_at:449:61; Interrogation_Position=1646; Antisense; ATGGTGGATCGTTCGACGCTTTCTT
>probe:Drosophila_2:1626427_a_at:699:513; Interrogation_Position=1649; Antisense; GTGGATCGTTCGACGCTTTCTTGTC
>probe:Drosophila_2:1626427_a_at:485:449; Interrogation_Position=1652; Antisense; GATCGTTCGACGCTTTCTTGTCCTC
>probe:Drosophila_2:1626427_a_at:153:717; Interrogation_Position=1657; Antisense; TTCGACGCTTTCTTGTCCTCCACAA
>probe:Drosophila_2:1626427_a_at:359:629; Interrogation_Position=1672; Antisense; TCCTCCACAAGCACAGGGACTCTAT
>probe:Drosophila_2:1626427_a_at:119:159; Interrogation_Position=1678; Antisense; ACAAGCACAGGGACTCTATCTGCAT
>probe:Drosophila_2:1626427_a_at:662:209; Interrogation_Position=1680; Antisense; AAGCACAGGGACTCTATCTGCATCC
>probe:Drosophila_2:1626427_a_at:706:79; Interrogation_Position=1686; Antisense; AGGGACTCTATCTGCATCCCTTCGA
>probe:Drosophila_2:1626427_a_at:351:405; Interrogation_Position=1689; Antisense; GACTCTATCTGCATCCCTTCGATTG
>probe:Drosophila_2:1626427_a_at:69:41; Interrogation_Position=1695; Antisense; ATCTGCATCCCTTCGATTGCACCAA
>probe:Drosophila_2:1626427_a_at:616:715; Interrogation_Position=1706; Antisense; TTCGATTGCACCAAGTATGTCAGGT
>probe:Drosophila_2:1626427_a_at:450:309; Interrogation_Position=1716; Antisense; CCAAGTATGTCAGGTGCTGGAATCA

Paste this into a BLAST search page for me
AGTTTATGGTGGATCGTTCGACGCTTTATGGTGGATCGTTCGACGCTTTCATGGTGGATCGTTCGACGCTTTCTTGTGGATCGTTCGACGCTTTCTTGTCGATCGTTCGACGCTTTCTTGTCCTCTTCGACGCTTTCTTGTCCTCCACAATCCTCCACAAGCACAGGGACTCTATACAAGCACAGGGACTCTATCTGCATAAGCACAGGGACTCTATCTGCATCCAGGGACTCTATCTGCATCCCTTCGAGACTCTATCTGCATCCCTTCGATTGATCTGCATCCCTTCGATTGCACCAATTCGATTGCACCAAGTATGTCAGGTCCAAGTATGTCAGGTGCTGGAATCA

Full Affymetrix probeset data:

Annotations for 1626427_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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