FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626457_s_at:

>probe:Drosophila_2:1626457_s_at:64:493; Interrogation_Position=5644; Antisense; GTAACTCAATTAATTCTAATCGCAA
>probe:Drosophila_2:1626457_s_at:327:185; Interrogation_Position=5695; Antisense; AACAAATCGCACGTGTTACACCCGA
>probe:Drosophila_2:1626457_s_at:455:353; Interrogation_Position=5703; Antisense; GCACGTGTTACACCCGACGAAGATA
>probe:Drosophila_2:1626457_s_at:255:597; Interrogation_Position=5757; Antisense; TGTGAAATACTGGACTATAGGCATT
>probe:Drosophila_2:1626457_s_at:626:217; Interrogation_Position=5800; Antisense; AAGTACATATAAGTGTTTCAGCTGT
>probe:Drosophila_2:1626457_s_at:710:705; Interrogation_Position=5859; Antisense; TTAGAGATGGACGAGAAGCAAACAC
>probe:Drosophila_2:1626457_s_at:240:183; Interrogation_Position=5884; Antisense; AAAACGAACACATCCGCACAGCATG
>probe:Drosophila_2:1626457_s_at:270:357; Interrogation_Position=5899; Antisense; GCACAGCATGTGCTAGCATTTTCTA
>probe:Drosophila_2:1626457_s_at:350:341; Interrogation_Position=5910; Antisense; GCTAGCATTTTCTAATTATCACTGT
>probe:Drosophila_2:1626457_s_at:446:225; Interrogation_Position=5990; Antisense; AAGGAGCCACAAAATCGATCATAAG
>probe:Drosophila_2:1626457_s_at:224:43; Interrogation_Position=6003; Antisense; ATCGATCATAAGGTCAACACATTAC
>probe:Drosophila_2:1626457_s_at:243:197; Interrogation_Position=6081; Antisense; AACGAGAGCGCAAACTAAAGTATTC
>probe:Drosophila_2:1626457_s_at:448:193; Interrogation_Position=6150; Antisense; AACTCGGTGGATAATGATGATTCAT
>probe:Drosophila_2:1626457_s_at:466:443; Interrogation_Position=6165; Antisense; GATGATTCATGTTTATGCATCAATC

Paste this into a BLAST search page for me
GTAACTCAATTAATTCTAATCGCAAAACAAATCGCACGTGTTACACCCGAGCACGTGTTACACCCGACGAAGATATGTGAAATACTGGACTATAGGCATTAAGTACATATAAGTGTTTCAGCTGTTTAGAGATGGACGAGAAGCAAACACAAAACGAACACATCCGCACAGCATGGCACAGCATGTGCTAGCATTTTCTAGCTAGCATTTTCTAATTATCACTGTAAGGAGCCACAAAATCGATCATAAGATCGATCATAAGGTCAACACATTACAACGAGAGCGCAAACTAAAGTATTCAACTCGGTGGATAATGATGATTCATGATGATTCATGTTTATGCATCAATC

Full Affymetrix probeset data:

Annotations for 1626457_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720