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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626481_a_at:

>probe:Drosophila_2:1626481_a_at:537:349; Interrogation_Position=1221; Antisense; GCAGGATCATCTACGAGTCGCCAAA
>probe:Drosophila_2:1626481_a_at:441:503; Interrogation_Position=1237; Antisense; GTCGCCAAAGATCCCCATAATTCTG
>probe:Drosophila_2:1626481_a_at:708:31; Interrogation_Position=1253; Antisense; ATAATTCTGCCCATGTGGCACGAGG
>probe:Drosophila_2:1626481_a_at:224:569; Interrogation_Position=1277; Antisense; GGCATGGACGATCTGTTGCCCAATG
>probe:Drosophila_2:1626481_a_at:503:595; Interrogation_Position=1300; Antisense; TGTGGAGCCCTATGTGATACAGCGT
>probe:Drosophila_2:1626481_a_at:5:115; Interrogation_Position=1329; Antisense; AGCAGGTGACGCTGAATGTTGGCCA
>probe:Drosophila_2:1626481_a_at:562:59; Interrogation_Position=1344; Antisense; ATGTTGGCCAGCCATTGGACCTCAA
>probe:Drosophila_2:1626481_a_at:578:553; Interrogation_Position=1360; Antisense; GGACCTCAACGACTTTATTCTGGAC
>probe:Drosophila_2:1626481_a_at:183:387; Interrogation_Position=1395; Antisense; GACAAGTACCGGAGCCAACGGCGCG
>probe:Drosophila_2:1626481_a_at:469:287; Interrogation_Position=1413; Antisense; CGGCGCGGAAGCTCATTACAGACAA
>probe:Drosophila_2:1626481_a_at:612:1; Interrogation_Position=1439; Antisense; ATCCAGGAAGCCTTTCGGGACTTGC
>probe:Drosophila_2:1626481_a_at:554:659; Interrogation_Position=1556; Antisense; TAAGCCTAAAATGAACCCTCGAAGC
>probe:Drosophila_2:1626481_a_at:241:281; Interrogation_Position=1573; Antisense; CTCGAAGCCCTTTTGATCCATTTAT
>probe:Drosophila_2:1626481_a_at:14:631; Interrogation_Position=1614; Antisense; TCCGTGTATTGCGACTAGTTCTTCA

Paste this into a BLAST search page for me
GCAGGATCATCTACGAGTCGCCAAAGTCGCCAAAGATCCCCATAATTCTGATAATTCTGCCCATGTGGCACGAGGGGCATGGACGATCTGTTGCCCAATGTGTGGAGCCCTATGTGATACAGCGTAGCAGGTGACGCTGAATGTTGGCCAATGTTGGCCAGCCATTGGACCTCAAGGACCTCAACGACTTTATTCTGGACGACAAGTACCGGAGCCAACGGCGCGCGGCGCGGAAGCTCATTACAGACAAATCCAGGAAGCCTTTCGGGACTTGCTAAGCCTAAAATGAACCCTCGAAGCCTCGAAGCCCTTTTGATCCATTTATTCCGTGTATTGCGACTAGTTCTTCA

Full Affymetrix probeset data:

Annotations for 1626481_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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