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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626552_at:

>probe:Drosophila_2:1626552_at:343:123; Interrogation_Position=1163; Antisense; AGCGCACCTTCCTTGAATCTTTTGA
>probe:Drosophila_2:1626552_at:423:685; Interrogation_Position=1182; Antisense; TTTTGAGGGACGATTGCGGGCACTT
>probe:Drosophila_2:1626552_at:332:517; Interrogation_Position=1231; Antisense; GTGGTACACTTCTCATGGTTTCATT
>probe:Drosophila_2:1626552_at:696:713; Interrogation_Position=1250; Antisense; TTCATTTGGCATGTGTGGGCAGCTT
>probe:Drosophila_2:1626552_at:667:593; Interrogation_Position=1265; Antisense; TGGGCAGCTTGCATGACGGAGCCAT
>probe:Drosophila_2:1626552_at:210:555; Interrogation_Position=1282; Antisense; GGAGCCATCATTCCCGTGGACAAAC
>probe:Drosophila_2:1626552_at:695:265; Interrogation_Position=1312; Antisense; CAGGGTGGCATTCGCATTCGCAATT
>probe:Drosophila_2:1626552_at:495:401; Interrogation_Position=1369; Antisense; GACATGTTGCCCGTGGTGACATACG
>probe:Drosophila_2:1626552_at:110:395; Interrogation_Position=1403; Antisense; GAAATGCCCTGCCTGGCAACGAATT
>probe:Drosophila_2:1626552_at:583:125; Interrogation_Position=1467; Antisense; AGCCTGTTCCACTTTAATCTCTGAA
>probe:Drosophila_2:1626552_at:425:613; Interrogation_Position=1488; Antisense; TGAACTCCAAAATCCCCACATTAAT
>probe:Drosophila_2:1626552_at:265:197; Interrogation_Position=1525; Antisense; AACGGAGCCAATCTGCACATTGCAT
>probe:Drosophila_2:1626552_at:434:141; Interrogation_Position=1559; Antisense; ACGGACTACTCCATGTAGGCGACTA
>probe:Drosophila_2:1626552_at:183:71; Interrogation_Position=1575; Antisense; AGGCGACTACGCTAGGCGACTGATT

Paste this into a BLAST search page for me
AGCGCACCTTCCTTGAATCTTTTGATTTTGAGGGACGATTGCGGGCACTTGTGGTACACTTCTCATGGTTTCATTTTCATTTGGCATGTGTGGGCAGCTTTGGGCAGCTTGCATGACGGAGCCATGGAGCCATCATTCCCGTGGACAAACCAGGGTGGCATTCGCATTCGCAATTGACATGTTGCCCGTGGTGACATACGGAAATGCCCTGCCTGGCAACGAATTAGCCTGTTCCACTTTAATCTCTGAATGAACTCCAAAATCCCCACATTAATAACGGAGCCAATCTGCACATTGCATACGGACTACTCCATGTAGGCGACTAAGGCGACTACGCTAGGCGACTGATT

Full Affymetrix probeset data:

Annotations for 1626552_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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