FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626654_a_at:

>probe:Drosophila_2:1626654_a_at:97:87; Interrogation_Position=1228; Antisense; AGTCCGGACATGATGGCCTCAAGTG
>probe:Drosophila_2:1626654_a_at:363:101; Interrogation_Position=1256; Antisense; AGAGCAGCTTTAAGGGATTTCGCAA
>probe:Drosophila_2:1626654_a_at:490:543; Interrogation_Position=1270; Antisense; GGATTTCGCAAGCAATTCAGTGGAC
>probe:Drosophila_2:1626654_a_at:153:11; Interrogation_Position=1284; Antisense; ATTCAGTGGACGGTTCAAGCGCCTA
>probe:Drosophila_2:1626654_a_at:465:541; Interrogation_Position=1295; Antisense; GGTTCAAGCGCCTAGTTACTCGAAA
>probe:Drosophila_2:1626654_a_at:223:521; Interrogation_Position=1321; Antisense; GTGGAACACACTCCAGTGATACCTC
>probe:Drosophila_2:1626654_a_at:248:457; Interrogation_Position=1338; Antisense; GATACCTCCAGAATTGAAGCCGCAA
>probe:Drosophila_2:1626654_a_at:221:721; Interrogation_Position=1405; Antisense; TTGCAAGCACAAGTGTTTTCCCCAC
>probe:Drosophila_2:1626654_a_at:395:475; Interrogation_Position=1419; Antisense; GTTTTCCCCACTATGTACGTATGCA
>probe:Drosophila_2:1626654_a_at:117:683; Interrogation_Position=1438; Antisense; TATGCACCTCATCGGTTGGCGTATA
>probe:Drosophila_2:1626654_a_at:547:217; Interrogation_Position=1552; Antisense; AAGTATTCAGCGTATTCGTGCGTAT
>probe:Drosophila_2:1626654_a_at:54:473; Interrogation_Position=1694; Antisense; GTTCAAATATCTGCTGGTAGTACCG
>probe:Drosophila_2:1626654_a_at:215:539; Interrogation_Position=1709; Antisense; GGTAGTACCGATACGAATCTATGTA
>probe:Drosophila_2:1626654_a_at:698:47; Interrogation_Position=1770; Antisense; ATCCTACCTATACCTACATGTTCAT

Paste this into a BLAST search page for me
AGTCCGGACATGATGGCCTCAAGTGAGAGCAGCTTTAAGGGATTTCGCAAGGATTTCGCAAGCAATTCAGTGGACATTCAGTGGACGGTTCAAGCGCCTAGGTTCAAGCGCCTAGTTACTCGAAAGTGGAACACACTCCAGTGATACCTCGATACCTCCAGAATTGAAGCCGCAATTGCAAGCACAAGTGTTTTCCCCACGTTTTCCCCACTATGTACGTATGCATATGCACCTCATCGGTTGGCGTATAAAGTATTCAGCGTATTCGTGCGTATGTTCAAATATCTGCTGGTAGTACCGGGTAGTACCGATACGAATCTATGTAATCCTACCTATACCTACATGTTCAT

Full Affymetrix probeset data:

Annotations for 1626654_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720