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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626730_s_at:

>probe:Drosophila_2:1626730_s_at:585:559; Interrogation_Position=3749; Antisense; GGAAGCGGAAGTGCCACCAACGGAA
>probe:Drosophila_2:1626730_s_at:181:337; Interrogation_Position=3861; Antisense; GCTCAGCGGATAGCCAACAGCAGCA
>probe:Drosophila_2:1626730_s_at:718:279; Interrogation_Position=3899; Antisense; CTCAACTCCCTGATGAGCAGTCAGA
>probe:Drosophila_2:1626730_s_at:121:115; Interrogation_Position=3914; Antisense; AGCAGTCAGACCCAGCTGAAGTTCA
>probe:Drosophila_2:1626730_s_at:180:173; Interrogation_Position=3942; Antisense; AAAGCGATCTGAGTGCCGAGCTGCA
>probe:Drosophila_2:1626730_s_at:108:313; Interrogation_Position=3989; Antisense; GCCATAAACGATACAGCCCACGATC
>probe:Drosophila_2:1626730_s_at:277:125; Interrogation_Position=4003; Antisense; AGCCCACGATCTGAATCTGCTGCAA
>probe:Drosophila_2:1626730_s_at:100:643; Interrogation_Position=4018; Antisense; TCTGCTGCAAGATGTGGATCCCATG
>probe:Drosophila_2:1626730_s_at:701:545; Interrogation_Position=4033; Antisense; GGATCCCATGGAGATTCTGTCCTAT
>probe:Drosophila_2:1626730_s_at:580:463; Interrogation_Position=4045; Antisense; GATTCTGTCCTATCTGGATCCTCAG
>probe:Drosophila_2:1626730_s_at:417:721; Interrogation_Position=4127; Antisense; TTGCTGGCCACGTTATTCGACTAGG
>probe:Drosophila_2:1626730_s_at:7:395; Interrogation_Position=4242; Antisense; GAAATGTGCACTAGACGCCAGTCGC
>probe:Drosophila_2:1626730_s_at:95:87; Interrogation_Position=4261; Antisense; AGTCGCGTACTTCAACCAACATTTT
>probe:Drosophila_2:1626730_s_at:77:255; Interrogation_Position=4277; Antisense; CAACATTTTCGTTTCCTCACACAAA

Paste this into a BLAST search page for me
GGAAGCGGAAGTGCCACCAACGGAAGCTCAGCGGATAGCCAACAGCAGCACTCAACTCCCTGATGAGCAGTCAGAAGCAGTCAGACCCAGCTGAAGTTCAAAAGCGATCTGAGTGCCGAGCTGCAGCCATAAACGATACAGCCCACGATCAGCCCACGATCTGAATCTGCTGCAATCTGCTGCAAGATGTGGATCCCATGGGATCCCATGGAGATTCTGTCCTATGATTCTGTCCTATCTGGATCCTCAGTTGCTGGCCACGTTATTCGACTAGGGAAATGTGCACTAGACGCCAGTCGCAGTCGCGTACTTCAACCAACATTTTCAACATTTTCGTTTCCTCACACAAA

Full Affymetrix probeset data:

Annotations for 1626730_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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