FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626751_at:

>probe:Drosophila_2:1626751_at:485:489; Interrogation_Position=1005; Antisense; GTACATGGAGACATCGCCGAGTGCT
>probe:Drosophila_2:1626751_at:563:327; Interrogation_Position=1064; Antisense; GCGTCTATCAGCAGGCCGAGCAGTT
>probe:Drosophila_2:1626751_at:402:115; Interrogation_Position=1082; Antisense; AGCAGTTGGCCAACGAGGCGCAGTC
>probe:Drosophila_2:1626751_at:578:519; Interrogation_Position=1126; Antisense; GTGGATAAATTCACGCTGCGCTGCA
>probe:Drosophila_2:1626751_at:652:269; Interrogation_Position=1149; Antisense; CATGCAGTGCGATGTCAGGCTGGTC
>probe:Drosophila_2:1626751_at:149:601; Interrogation_Position=1232; Antisense; TTTAATACGTCCTGATCTTCGGCAC
>probe:Drosophila_2:1626751_at:303:715; Interrogation_Position=1249; Antisense; TTCGGCACCGTCTACATTGTGGCAT
>probe:Drosophila_2:1626751_at:150:729; Interrogation_Position=1265; Antisense; TTGTGGCATTCATGCTGTTCGCCTA
>probe:Drosophila_2:1626751_at:102:233; Interrogation_Position=1313; Antisense; AATCGCCGTGCGAGGAGTCATCTCA
>probe:Drosophila_2:1626751_at:335:647; Interrogation_Position=1330; Antisense; TCATCTCATTAGCAGTACTACCTCC
>probe:Drosophila_2:1626751_at:524:245; Interrogation_Position=1379; Antisense; AATTATTGAATTGAGCCCAGCCGCC
>probe:Drosophila_2:1626751_at:497:285; Interrogation_Position=1403; Antisense; CTGTATTCATGTTAGTCCCCTTTTA
>probe:Drosophila_2:1626751_at:578:105; Interrogation_Position=950; Antisense; AGAACTTTGGACTGCGTGTCTTCCT
>probe:Drosophila_2:1626751_at:483:257; Interrogation_Position=991; Antisense; CACTACGATCCGCTGTACATGGAGA

Paste this into a BLAST search page for me
GTACATGGAGACATCGCCGAGTGCTGCGTCTATCAGCAGGCCGAGCAGTTAGCAGTTGGCCAACGAGGCGCAGTCGTGGATAAATTCACGCTGCGCTGCACATGCAGTGCGATGTCAGGCTGGTCTTTAATACGTCCTGATCTTCGGCACTTCGGCACCGTCTACATTGTGGCATTTGTGGCATTCATGCTGTTCGCCTAAATCGCCGTGCGAGGAGTCATCTCATCATCTCATTAGCAGTACTACCTCCAATTATTGAATTGAGCCCAGCCGCCCTGTATTCATGTTAGTCCCCTTTTAAGAACTTTGGACTGCGTGTCTTCCTCACTACGATCCGCTGTACATGGAGA

Full Affymetrix probeset data:

Annotations for 1626751_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720