FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626780_s_at:

>probe:Drosophila_2:1626780_s_at:366:241; Interrogation_Position=2206; Antisense; AATACAATGACCTTTGCTGGCAAAA
>probe:Drosophila_2:1626780_s_at:317:651; Interrogation_Position=2284; Antisense; TCAAATCCTAATCTCTGTGCACCTA
>probe:Drosophila_2:1626780_s_at:129:509; Interrogation_Position=2300; Antisense; GTGCACCTACGTATAACATCTTGTT
>probe:Drosophila_2:1626780_s_at:421:661; Interrogation_Position=2313; Antisense; TAACATCTTGTTGACTTCGCAGCGC
>probe:Drosophila_2:1626780_s_at:662:149; Interrogation_Position=2326; Antisense; ACTTCGCAGCGCTTGGAGGGCATTG
>probe:Drosophila_2:1626780_s_at:605:315; Interrogation_Position=2467; Antisense; GCCTCCAGCGATAGTGGCATATTCT
>probe:Drosophila_2:1626780_s_at:577:569; Interrogation_Position=2482; Antisense; GGCATATTCTCGACCATCAGCAATG
>probe:Drosophila_2:1626780_s_at:377:359; Interrogation_Position=2501; Antisense; GCAATGGTTTAAACAGCCTGTACTC
>probe:Drosophila_2:1626780_s_at:582:689; Interrogation_Position=2531; Antisense; TATTCGGCTAAGGAACGGCGATTTC
>probe:Drosophila_2:1626780_s_at:131:293; Interrogation_Position=2549; Antisense; CGATTTCGAGGATCTTCATTAAGGA
>probe:Drosophila_2:1626780_s_at:223:639; Interrogation_Position=2607; Antisense; TAAGTTACAACCTTCGACGTACTAT
>probe:Drosophila_2:1626780_s_at:623:405; Interrogation_Position=2622; Antisense; GACGTACTATTTATTGTGAACAGGA
>probe:Drosophila_2:1626780_s_at:556:101; Interrogation_Position=2663; Antisense; AGACCCAAATAAAGCGTTCAACCAG
>probe:Drosophila_2:1626780_s_at:693:327; Interrogation_Position=2676; Antisense; GCGTTCAACCAGTGCAATCTATTCT

Paste this into a BLAST search page for me
AATACAATGACCTTTGCTGGCAAAATCAAATCCTAATCTCTGTGCACCTAGTGCACCTACGTATAACATCTTGTTTAACATCTTGTTGACTTCGCAGCGCACTTCGCAGCGCTTGGAGGGCATTGGCCTCCAGCGATAGTGGCATATTCTGGCATATTCTCGACCATCAGCAATGGCAATGGTTTAAACAGCCTGTACTCTATTCGGCTAAGGAACGGCGATTTCCGATTTCGAGGATCTTCATTAAGGATAAGTTACAACCTTCGACGTACTATGACGTACTATTTATTGTGAACAGGAAGACCCAAATAAAGCGTTCAACCAGGCGTTCAACCAGTGCAATCTATTCT

Full Affymetrix probeset data:

Annotations for 1626780_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720